About: EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data

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article by Aaron T L Lun et al published 22 March 2019 in Genome Biology

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rdf:type	Item
description	wetenschappelijk artikel (nl) наукова стаття, опублікована в березні 2019 (uk) im März 2019 veröffentlichter wissenschaftlicher Artikel (de) article by Aaron T L Lun et al published 22 March 2019 in Genome Biology (en)
publication date	wds:Q62799123-C6A81AAC-C45C-4475-99C0-5884D9EEC4CC
publication date	2019-03-22 00:00:00Z (xsd:dateTime)
language of work or name	wds:Q62799123-050462DD-9D74-4D55-8359-10650D4268C9
language of work or name	English
exact match	wds:Q62799123-07B4D0E8-1956-4AAB-AF8B-E942161A9DE8
exact match	https://scigraph.springernature.com/pub.10.1186/s13059-019-1662-y
cites work	wds:Q62799123-1299D88E-0B21-46BB-A12F-FE3DEC9D7D85 wds:Q62799123-13696C9B-97F1-42F4-BF12-D7C81C556DFC wds:Q62799123-218341E5-3683-4CC2-960D-9F1E731779D1 wds:Q62799123-25004871-3F9E-49F1-B2B1-6725C5C015CB wds:Q62799123-26B3E6D6-019A-4D83-8951-80E43323843E wds:Q62799123-3262DEEC-7EC6-4BE2-BC57-99E7033D4EA1 wds:Q62799123-33FE27CC-4EF8-4981-8FA2-900AA240E296 wds:Q62799123-3B8A6C19-5AFC-44AF-A8A4-AC456BBA759D wds:Q62799123-5D221173-619F-4C62-98E8-59E7AD57FA57 wds:Q62799123-61829A38-915C-457C-83F3-4E642563C3E4 wds:Q62799123-7AA0E2F3-2565-4423-A082-84B50496C775 wds:Q62799123-7FAA680B-4029-439C-ADFC-724798BF4839 wds:Q62799123-906D0EAE-ED3E-4431-8641-B9AF221E8B36 wds:Q62799123-907D5881-DD14-42D5-9685-E87D3546E6D6 wds:Q62799123-B53B3CB9-CDA5-4AF6-97B5-936BBF62021D wds:Q62799123-C337BAFA-0533-4C5C-8602-BB0B6EA82D7D wds:Q62799123-DDED553A-D313-450D-BCA6-1E710DFBDBED wds:Q62799123-E402AD3B-4855-49DE-B85A-33C0DF75541C wds:Q62799123-E5691149-5BD1-4410-8C47-9725572F58ED wds:Q62799123-F22A194D-15D3-442A-A350-FD22C60FD6D3
cites work	Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets Permutation P-values should never be zero: calculating exact P-values when permutations are randomly drawn. Identification of cell types from single-cell transcriptomes using a novel clustering method. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data Smart-seq2 for sensitive full-length transcriptome profiling in single cells. Quantitative single-cell RNA-seq with unique molecular identifiers Orchestrating high-throughput genomic analysis with Bioconductor Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells. Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex Massively parallel digital transcriptional profiling of single cells Pooling across cells to normalize single-cell RNA sequencing data with many zero counts. Platelet mRNA: the meaning behind the message UpSet: Visualization of Intersecting Sets. Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor. Massively parallel single-nucleus RNA-seq with DroNc-seq The Human Cell Atlas Single-cell reconstruction of the early maternal–fetal interface in humans Detection and removal of barcode swapping in single-cell RNA-seq data Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis
author name string	wds:Q62799123-77AE53DE-79D8-4F3E-89C1-3329985BCC7E wds:Q62799123-817490BC-EAB2-4E25-8646-A77E7280A23D wds:Q62799123-B3EB775D-E610-45E1-BCF2-F22C8E0B6014
author name string	Aaron T L Lun Samantha Riesenfeld The Phuong Dao
rdfs:label	EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data (en) EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data (nl)
skos:prefLabel	EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data (en) EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data (nl)
name	EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data (en) EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data (nl)
author	wds:Q62799123-4CFF2A7B-BFDB-4BB8-B850-D175548B6142 wds:Q62799123-6F70592F-FBFC-4661-9676-5989BEDF0121 wds:Q62799123-C130D0FE-2AA2-41F2-8566-648CE391B2D5
author	John Marioni Tomás Gomes Tallulah Andrews
title	wds:Q62799123-ABA747AB-63D4-4D54-ADF3-7848029763DB
title	EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data (en)
page(s)	wds:Q62799123-872B5AB3-9ED2-44AD-8690-7278E7A88DD4
page(s)	63
instance of	wds:Q62799123-37D3C3EB-E1D5-42AA-8B4C-5251A7222F1C
instance of	scholarly article
main subject	wds:Q62799123-678FC920-C401-4568-AD3F-2432E4389CFE
main subject	single-cell RNA-seq
PubMed ID	wds:Q62799123-93D227DF-6A26-475E-AAFF-D8ACDD1C8B29
PubMed ID	http://rdf.ncbi.nlm.nih.gov/pubchem/reference/30902100
PubMed ID	30902100
published in	wds:Q62799123-36C13D2C-E1F8-458A-8105-B6EFCF7BB352
published in	Genome Biology
issue	wds:Q62799123-74B5367A-421A-4660-B041-46A6DBB3BF1B
volume	wds:Q62799123-4C0A381E-13C9-4E0B-8679-73520B1ED720
issue	1
volume	20
DOI	wds:Q62799123-C129B2A7-F010-4BF3-8192-E12AA9E6F44C
DOI	http://dx.doi.org/10.1186/S13059-019-1662-Y
DOI	10.1186/S13059-019-1662-Y
copyright license	wds:Q62799123-8e762d29-1fde-4998-8157-2b8626e18405
copyright status	wds:Q62799123-93e71d41-4ccb-4af3-b85b-66a30b6c59ec
copyright license	Creative Commons Attribution 4.0 International
copyright status	copyrighted
describes a project that uses	wds:Q62799123-C0B3A5B0-C522-48F9-9F57-3C590D47E2D6
describes a project that uses	edgeR
Dimensions Publication ID	wds:Q62799123-B865A7F6-E2E7-43EA-99DC-189637641DB9
Dimensions Publication ID	1112948105
PMCID	wds:Q62799123-0F10705D-E6C2-4CF6-B269-39CC3CAEEB17
PMCID	6431044
is about of	https://www.wikidata.org/wiki/Special:EntityData/Q62799123

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