About: Detection and removal of barcode swapping in single-cell RNA-seq data

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scientific article published in Nature Communications

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rdf:type	Item
description	artículu científicu (ast) article publié dans Nature Communications (fr) наукова стаття, опублікована в липні 2018 (uk) im Juli 2018 veröffentlichter wissenschaftlicher Artikel (de) scientific article published in Nature Communications (en)
publication date	wds:Q57235278-97AF09B7-A425-4E1C-B282-C33C3AAA12C4
publication date	2018-07-10 00:00:00Z (xsd:dateTime)
language of work or name	wds:Q57235278-C5F6282B-A82E-4D7F-BFBC-D3C942D94343
language of work or name	English
exact match	wds:Q57235278-04CA0794-FB2C-490C-832D-D2E570D44C11
exact match	https://scigraph.springernature.com/pub.10.1038/s41467-018-05083-x
cites work	wds:Q57235278-1CE87719-8B5B-44E8-86B1-B78871962D28 wds:Q57235278-4DAD38CC-4746-46F0-BF17-D6145651E525 wds:Q57235278-4FD29911-980B-454C-98E6-A79062F8A0CE wds:Q57235278-510C212B-D36A-42CA-AC02-FAB2A0ED089C wds:Q57235278-5F4373A1-3B1E-47BA-93BE-21D09A958E19 wds:Q57235278-6DD9A777-1A58-4EF1-AEEC-96AE8DEFC9A4 wds:Q57235278-9552C70F-207A-41B4-9962-140534143D53 wds:Q57235278-AD57F4B7-89E9-4C95-AF7F-EBD6CD8AE5B3 wds:Q57235278-AF9B5C3E-2C5E-41CE-A921-84B7C759F43D wds:Q57235278-BD37644B-7358-4F65-B4C0-D3BC7FD5E010 wds:Q57235278-DDD58673-A710-4CC6-BE67-E0EDD7518256 wds:Q57235278-E847BFA1-2338-4D95-8278-EF40ABE98704 wds:Q57235278-F581B805-B6B5-48E2-8979-9C4782BE9B80 wds:Q57235278-F8A3B0D3-8A9C-4F44-9B13-2A3F4BD70B96
cites work	Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets Full-length RNA-seq from single cells using Smart-seq2. Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens Massively parallel digital transcriptional profiling of single cells Combined Single-Cell Functional and Gene Expression Analysis Resolves Heterogeneity within Stem Cell Populations CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq A single-cell resolution map of mouse hematopoietic stem and progenitor cell differentiation A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor. Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing. Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms. T cell cytolytic capacity is independent of initial stimulation strength Computational correction of index switching in multiplexed sequencing libraries Distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
author name string	wds:Q57235278-18656FE5-3F91-438E-8880-0F863FD13BEC
author name string	Karsten Bach
rdfs:label	Detection and removal of barcode swapping in single-cell RNA-seq data (en)
skos:prefLabel	Detection and removal of barcode swapping in single-cell RNA-seq data (en)
name	Detection and removal of barcode swapping in single-cell RNA-seq data (en)
author	wds:Q57235278-0B46D623-D592-481A-B1FD-38C8AF422A3E wds:Q57235278-10978724-EB48-4720-B439-EC9DC42FE4AF wds:Q57235278-233D7511-C24B-4D4B-8D9E-876FAD5D5A20 wds:Q57235278-BCD8B72D-9165-4F40-A4CB-F23B56C87DDB
author	John Marioni Aaron Lun Jonathan A Griffiths Arianne C Richard
title	wds:Q57235278-2E1D11C9-7FE4-4E8A-84B7-8FFE5CD86D3A
title	Detection and removal of barcode swapping in single-cell RNA-seq data (en)
page(s)	wds:Q57235278-F31CAF64-9FB7-4B14-BB1D-6EDA7D31CF72
page(s)	2667
instance of	wds:Q57235278-DD855272-667A-4DBA-BB7C-5EC54557F423
instance of	scholarly article
main subject	wds:Q57235278-4D745902-D2E0-4CF5-8770-98EA3F7EE3F5 wds:Q57235278-58A5010F-1F9F-4CB0-B327-5B3592FE9572 wds:Q57235278-DC8C661B-CFDA-4884-8CEA-C4BDA599DF41
main subject	RNA sequencing general chemistry single-cell RNA-seq
PubMed ID	wds:Q57235278-EF27D307-321F-4C9C-A639-1822B8B14EEF
PubMed ID	http://rdf.ncbi.nlm.nih.gov/pubchem/reference/29991676
PubMed ID	29991676
published in	wds:Q57235278-BBE7F437-5DB1-47B1-8AC0-56C7653C977D
published in	Nature Communications
issue	wds:Q57235278-C43552E4-194A-4264-AD32-583E077F3333
volume	wds:Q57235278-0078912D-DA38-4EC3-B3E6-D7E8298D7C26
issue	1
volume	9
DOI	wds:Q57235278-14C78605-C754-43FD-805C-89E239806F62
DOI	http://dx.doi.org/10.1038/S41467-018-05083-X
DOI	10.1038/S41467-018-05083-X
copyright license	wds:Q57235278-c6566a9d-4a32-4af0-adb5-811c8ee4dc82
copyright status	wds:Q57235278-fcdb112f-567a-4df5-8f46-d5a8c9eb2d64
copyright license	Creative Commons Attribution 4.0 International
copyright status	copyrighted
ADS bibcode	wds:Q57235278-B4A80769-0502-4C36-9DBC-251D320947F0
ADS bibcode	2018NatCo...9.2667G
PMCID	wds:Q57235278-7F5B35F5-4F13-461B-BFA5-C22B273F1B7A
PMCID	6039488
is about of	https://www.wikidata.org/wiki/Special:EntityData/Q57235278
is cites work of	Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing. A Multi-Omics Approach to Liver Diseases: Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver Supervised classification enables rapid annotation of cell atlases Issues and current standards of controls in microbiome research Disentangling sRNA-Seq data to study RNA communication between species Meningeal γδ T cells regulate anxiety-like behavior via IL-17a signaling in neurons EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data A transcriptional roadmap for 2C-like-to-pluripotent state transition ILC2-driven innate immune checkpoint mechanism antagonizes NK cell antimetastatic function in the lung Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease A case of mistaken identity Calling Variants in the Clinic: Informed Variant Calling Decisions Based on Biological, Clinical, and Laboratory Variables Decontamination of ambient RNA in single-cell RNA-seq with DecontX Orchestrating single-cell analysis with Bioconductor

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