About: Biological Expression Language

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A domain specific language for causal, correlative, and associative biological relations

Attributes	Values
rdf:type	Item
description	A domain specific language for causal, correlative, and associative biological relations (en)
creator	wds:Q61047486-09f37786-416c-fc8b-cca3-e00609c96392
creator	Dexter Pratt
rdfs:label	Biological Expression Language (en)
skos:prefLabel	Biological Expression Language (en)
name	Biological Expression Language (en)
instance of	wds:Q61047486-52385592-4aba-6e35-0679-87f777534c70 wds:Q61047486-71a474aa-4c85-ecb0-d96c-2502026f6d65 wds:Q61047486-7cfd7fd1-498c-96e5-84a5-951d8230e3dc
instance of	domain-specific language text file programming language
media type	wds:Q61047486-f0e9ae6c-4b12-01cc-4b32-251d0e3633ac
file extension	wds:Q61047486-4d2c037d-43eb-81de-c7f4-1aa99abb7ee6
media type	text/plain
file extension	bel
maintained by	wds:Q61047486-4aa3d272-44cf-4943-2510-0a8945fc93dc wds:Q61047486-5b22d971-4f9f-cb58-7e49-bacd10d3f8ad wds:Q61047486-84b7c6af-4114-8ddb-86bd-15a269a06a6c wds:Q61047486-9ad3a1df-44d3-4017-fda8-eeb988a3a7cf wds:Q61047486-c3a0250d-43f1-191d-385b-9efa214482ad
software version identifier	wds:Q61047486-2fa3e7ee-4dec-87d5-41d7-98c719d45661 wds:Q61047486-6953ec67-4c6c-cd5f-9534-723e1918186f wds:Q61047486-8094d5bf-4660-f367-ee2a-f04cb6ff0aa7 wds:Q61047486-e97ee0cc-448a-3ac5-dc0d-d4d90e930a08
maintained by	Charles Tapley Hoyt John Bachman Biological Expression Language Committee Natalie L Catlett William Hayes
software version identifier	2.2 2.1 2.0 1.0
skos:altLabel	BEL (en)
different from	wds:Q61047486-18597d4c-4002-841e-c845-5e89ea269d80 wds:Q61047486-b0a28aba-448c-46b5-74ef-ea0ca10f33a8 wds:Q61047486-eeed1848-44e2-d1e3-50f8-8ecb2a742604
GitHub username	wds:Q61047486-a3f30849-4c30-6fb2-c792-95a54fd5b124
official website	wds:Q61047486-09d8f8fc-4093-d04f-2dc8-7f99cac64c84 wds:Q61047486-5b828b68-4a0e-811a-472d-10d7c702eda2
different from	Systems Biology Markup Language BioPAX Systems Biology Graphical Notation
GitHub username	biological-expression-language
official website	https://biological-expression-language.github.io https://openbel.org
programmed in	wds:Q61047486-f9313ba8-4d6a-dea6-07f6-2c6e59038bf4
programmed in	Biological Expression Language
is field of work of	INDRA team
is field of work of	wds:Q107392214-b0bf4ff0-440b-0768-21d3-3ef5c971df8c
is about of	https://www.wikidata.org/wiki/Special:EntityData/Q61047486
is uses of	PyBEL
is uses of	wds:Q96470799-a6dd2ec9-444a-38b0-7dd6-16dac04f1039
is main subject of	Computable cause-and-effect models of healthy and Alzheimer's disease states and their mechanistic differential analysis Assessment of network perturbation amplitudes by applying high-throughput data to causal biological networks Systematic verification of upstream regulators of a computable cellular proliferation network model on non-diseased lung cells using a dedicated dataset A vascular biology network model focused on inflammatory processes to investigate atherogenesis and plaque instability. Quantitative assessment of biological impact using transcriptomic data and mechanistic network models Reverse causal reasoning: applying qualitative causal knowledge to the interpretation of high-throughput data A network-based approach to quantifying the impact of biologically active substances Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications Quantification of biological network perturbations for mechanistic insight and diagnostics using two-layer causal models Construction of biological networks from unstructured information based on a semi-automated curation workflow Case study: the role of mechanistic network models in systems toxicology Computational Modelling Approaches on Epigenetic Factors in Neurodegenerative and Autoimmune Diseases and Their Mechanistic Analysis Multimodal Mechanistic Signatures for Neurodegenerative Diseases (NeuroMMSig): a web server for mechanism enrichment Reasoning over genetic variance information in cause-and-effect models of neurodegenerative diseases Comorbidity Analysis between Alzheimer's Disease and Type 2 Diabetes Mellitus (T2DM) Based on Shared Pathways and the Role of T2DM Drugs Construction of a computable cell proliferation network focused on non-diseased lung cells A computable cellular stress network model for non-diseased pulmonary and cardiovascular tissue Construction of a computable network model for DNA damage, autophagy, cell death, and senescence Biological Expression Language Committee Generation and Applications of Knowledge Graphs in Systems and Networks Biology A modular cell-type focused inflammatory process network model for non-diseased pulmonary tissue Integration of Structured Biological Data Sources using Biological Expression Language PyBEL ComPath: An ecosystem for exploring, analyzing, and curating mappings across pathway databases Of Mice and Men: Comparative Analysis of Neuro-Inflammatory Mechanisms in Human and Mouse Using Cause-and-Effect Models The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST) The BEL information extraction workflow (BELIEF): evaluation in the BioCreative V BEL and IAT track The role of metadata in reproducible computational research The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling STonKGs: A Sophisticated Transformer Trained on Biomedical Text and Knowledge Graphs COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology BioKEEN: a library for learning and evaluating biological knowledge graph embeddings Recent advances in modeling languages for pathway maps and computable biological networks In vitro systems toxicology approach to investigate the effects of repeated cigarette smoke exposure on human buccal and gingival organotypic epithelial tissue cultures PyBEL: a Computational Framework for Biological Expression Language Semi-Automated Curation Allows Causal Network Model Building for the Quantification of Age-Dependent Plaque Progression in ApoE-/- Mouse Using Drugs as Molecular Probes: A Computational Chemical Biology Approach in Neurodegenerative Diseases A systematic approach for identifying shared mechanisms in epilepsy and its comorbidities Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL). BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language Re-curation and Rational Enrichment of Knowledge Graphs in Biological Expression Language Re-curation and rational enrichment of knowledge graphs in Biological Expression Language. PathMe: Merging and exploring mechanistic pathway knowledge BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language PathMe: merging and exploring mechanistic pathway knowledge

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