About: Have the cake and eat it: Optimizing nondestructive DNA metabarcoding of macroinvertebrate samples for freshwater biomonitoring

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About: Have the cake and eat it: Optimizing nondestructive DNA metabarcoding of macroinvertebrate samples for freshwater biomonitoring Goto Sponge NotDistinct Permalink

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scientific article published on 29 April 2019

Attributes	Values
rdf:type	Item
description	wetenschappelijk artikel (nl) artículu científicu espublizáu n'abril de 2019 (ast) im April 2019 veröffentlichter wissenschaftlicher Artikel (de) scientific article published on 29 April 2019 (en) наукова стаття, опублікована 29 квітня 2019 (uk)
publication date	wds:Q92552224-30D7C51B-3923-46AC-9A21-BC30C489F56F
publication date	2019-04-29 00:00:00Z (xsd:dateTime)
language of work or name	wds:Q92552224-92831EEC-A272-437B-AB62-00C87CA0D28A
language of work or name	English
cites work	wds:Q92552224-0A250118-79C1-4104-9721-2DDC120CA33D wds:Q92552224-0B1A7411-FEB0-4F8B-B669-A39AD4FC8662 wds:Q92552224-22279DA2-0D8B-4893-A49E-CDDFF1983733 wds:Q92552224-2448BF19-6C87-4503-B6FB-A878C844E2B4 wds:Q92552224-3033E07A-249F-403C-B4E7-55B59FC72BE0 wds:Q92552224-3F5A7467-C1EA-466D-94B3-4578663C365F wds:Q92552224-41348015-0D95-4E60-BB29-E0B6EFB38C51 wds:Q92552224-460BC721-1A9A-4B82-BBB8-83EAF4E48912 wds:Q92552224-46BC08C6-186B-40C5-ABD0-2AAC4EE9D3C7 wds:Q92552224-4CEBF100-789E-47A3-A04D-659E51C38C0F wds:Q92552224-4D708530-F82B-4981-B062-BAFAAF41E17E wds:Q92552224-4E1E282D-507E-4A97-B505-ADA63DF505A6 wds:Q92552224-611426C0-2945-43A1-B833-A81D59341BCB wds:Q92552224-66F6B71B-5B38-49E7-9F5C-7602BC030F3A wds:Q92552224-848FAAF7-1902-46C5-AF70-6C0D3584734C wds:Q92552224-900DDF18-76B9-455D-B098-6E86F1593584 wds:Q92552224-933B0C1D-1ECA-416F-B3FE-A795F29E8FE3 wds:Q92552224-93451FBD-8FA2-4D0D-B0FE-AC68326FE9B9 wds:Q92552224-9A661638-E9E3-4725-A3B2-87C6AFAB0BA5 wds:Q92552224-A31B06D3-85AB-40AD-9E0F-1EB87E46AC64 wds:Q92552224-A49A03B4-2707-4F84-BC2D-C2AD219F4A14 wds:Q92552224-A79255C5-AAD0-49BE-A2F1-BE239CD41B17 wds:Q92552224-AEE70870-C32A-467F-ABE7-9036C7A10EF7 wds:Q92552224-B4F51339-ADEC-4DD4-B868-99B2724B3256 wds:Q92552224-B713260F-A7C9-437A-B091-625F6BB06883 wds:Q92552224-BADCB943-4D02-44A3-B38D-E9D08ADB960C wds:Q92552224-BD4B9F23-3AEF-45BF-82D7-62B590202462 wds:Q92552224-CCCD6EE1-DBEA-4625-AF01-8D9ACDD6B8A5 wds:Q92552224-D05D2FDA-499A-4F9A-A524-8ADBDC12A041 wds:Q92552224-D5057C65-C170-455D-8608-85FB78B4F8AD wds:Q92552224-E501C9AB-927D-44E7-97A1-C4111BF0D260 wds:Q92552224-E7FDE23D-6984-4CB4-8BE8-1FDE9D8974FB wds:Q92552224-EC74C39E-6A51-463F-B6BB-E17E9E3748BA wds:Q92552224-F5F72933-4C63-4248-AC53-E85B0830F407 wds:Q92552224-F7801841-1DCF-4B55-B9A6-5158717E7FCE
cites work	PCR inhibitors - occurrence, properties and removal Evaluating ethanol-based sample preservation to facilitate use of DNA barcoding in routine freshwater biomonitoring programs using benthic macroinvertebrates DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos Towards next-generation biodiversity assessment using DNA metabarcoding Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA. A comprehensive DNA sequence library is essential for identification with DNA barcodes Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data Global threats to human water security and river biodiversity Waste not, want not: why rarefying microbiome data is inadmissible obitools: a unix-inspired software package for DNA metabarcoding Developments in aquatic insect biomonitoring: a comparative analysis of recent approaches Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics Direct PCR amplification and sequencing of specimens' DNA from preservative ethanol PhylOTU: a high-throughput procedure quantifies microbial community diversity and resolves novel taxa from metagenomic data. Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet Environmental monitoring using next generation sequencing: rapid identification of macroinvertebrate bioindicator species Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe Can non-destructive DNA extraction of bulk invertebrate samples be used for metabarcoding? Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing Metabarcoding of freshwater invertebrates to detect the effects of a pesticide spill. The effect of DNA degradation bias in passive sampling devices on metabarcoding studies of arthropod communities and their associated microbiota. Lessons from genome skimming of arthropod-preserving ethanol Sorting things out: Assessing effects of unequal specimen biomass on DNA metabarcoding. DNA metabarcoding from sample fixative as a quick and voucher-preserving biodiversity assessment method 1 Optimal extraction methods for the simultaneous analysis of DNA from diverse organisms and sample types. How much is enough? Effects of technical and biological replication on metabarcoding dietary analysis Minimizing polymerase biases in metabarcoding Proper experimental design requires randomization/balancing of molecular ecology experiments.
author name string	wds:Q92552224-5E0B1CC4-F1FA-4B00-83E6-6565E8C87C13 wds:Q92552224-B083FEF7-B9B9-4B77-8071-C5F5854360F2
author name string	Amílcar Teixeira Paulo Pinheiro
rdfs:label	Have the cake and eat it: Optimizing nondestructive DNA metabarcoding of macroinvertebrate samples for freshwater biomonitoring (en) Have the cake and eat it: Optimizing nondestructive DNA metabarcoding of macroinvertebrate samples for freshwater biomonitoring (nl)
skos:prefLabel	Have the cake and eat it: Optimizing nondestructive DNA metabarcoding of macroinvertebrate samples for freshwater biomonitoring (en) Have the cake and eat it: Optimizing nondestructive DNA metabarcoding of macroinvertebrate samples for freshwater biomonitoring (nl)
name	Have the cake and eat it: Optimizing nondestructive DNA metabarcoding of macroinvertebrate samples for freshwater biomonitoring (en) Have the cake and eat it: Optimizing nondestructive DNA metabarcoding of macroinvertebrate samples for freshwater biomonitoring (nl)
author	wds:Q92552224-25E200AC-FF13-48C5-A6F3-AC21F0E61BD7 wds:Q92552224-889F3715-2A3E-4DE9-BA31-A84B0832DA87 wds:Q92552224-95F326E5-A8BE-48B3-809D-BB1CB52B799B wds:Q92552224-96580F4B-614D-453B-9637-9ACCF84A4150 wds:Q92552224-D972B64D-A680-493F-9D53-0814F3C430DF wds:Q92552224-F6D30233-9765-4504-812F-40CC42419CC4
author	Paulo Célio Alves Pedro Beja Ana Filipa Filipe Joana Paupério

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