About: DNA enrichment and tagmentation method for species-level identification and strain-level differentiation using ON-rep-seq

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About: DNA enrichment and tagmentation method for species-level identification and strain-level differentiation using ON-rep-seq Goto Sponge NotDistinct Permalink

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scientific article published on 10 October 2019

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rdf:type	Item
description	wetenschappelijk artikel (nl) artículu científicu espublizáu n'ochobre de 2019 (ast) im Oktober 2019 veröffentlichter wissenschaftlicher Artikel (de) наукова стаття, опублікована 10 жовтня 2019 (uk) scientific article published on 10 October 2019 (en) 2019 թվականի հոկտեմբերի 10-ին հրատարակված գիտական հոդված (hy)
publication date	wds:Q90841022-DFE24294-C94E-4A37-A6D5-30E34226C8AA
publication date	2019-10-10 00:00:00Z (xsd:dateTime)
cites work	wds:Q90841022-0822E49C-4615-4435-ADF6-B28286D28D8F wds:Q90841022-1902C457-1DC5-43D6-846B-CD7A4648B165 wds:Q90841022-19F7FB18-E4B0-4DF4-A364-024CD5434B8E wds:Q90841022-1FE96934-7394-4A72-BB3A-17575949BF8C wds:Q90841022-2B317415-C3D0-4FB7-991D-46996D05CFDE wds:Q90841022-36757446-C3D3-4AA4-9F3B-FE684A3A8D38 wds:Q90841022-4F4552FE-E5B6-41F0-A783-7D701D530C5A wds:Q90841022-543F2D04-F290-438B-96A9-B089CC27D8CD wds:Q90841022-55A1C1B3-D648-4715-A9C5-601D369E1324 wds:Q90841022-57764B22-A559-47C6-B1F2-A89428B09ADF wds:Q90841022-61613C9F-0153-43BF-A2ED-BAF275D875D2 wds:Q90841022-660D6974-309D-4D47-9F3F-8E9553EDF4AF wds:Q90841022-697F65EF-09F3-4613-9D03-30ED0F7960D3 wds:Q90841022-78D6B374-435D-454B-B6CF-05BB6857F830 wds:Q90841022-82776D3B-138F-4D24-9E81-F387ECA88CD0 wds:Q90841022-839B9380-DAB1-444F-963E-356CEE863150 wds:Q90841022-83C72EAC-8B3E-46B5-8E5E-579FBAE8AFFB wds:Q90841022-88A2A630-F103-4946-94C8-3D98DAA40CF6 wds:Q90841022-8C2E7C4F-8C2F-4AE9-B56B-587C368566E0 wds:Q90841022-910D643D-A758-426C-9425-988FD8CCACE2 wds:Q90841022-9E57E4DF-A1D5-4548-BBDA-B8EB2446CD8D wds:Q90841022-A3D29710-D80B-490C-9FFD-A88B492FA1DC wds:Q90841022-A48BEC64-3E1F-4E34-AF43-4653F61BEC97 wds:Q90841022-AC7A5E96-99B8-439C-83FE-B9ADB02E14F8 wds:Q90841022-AFCB2499-5684-4504-9C49-9C00B1E46EE2 wds:Q90841022-B2FE392A-07EE-4ABE-BD95-0EC67341E7A2 wds:Q90841022-B882FB37-2D28-4EFF-9065-53D1946849F6 wds:Q90841022-BAD0ED2F-8FB4-448E-A02C-E4CE90C0DFFF wds:Q90841022-C290CF47-8334-4294-87E1-1D9F3A3C832F wds:Q90841022-C317309D-F6F6-40A1-8EAB-42C66EB143B6 wds:Q90841022-D24BBE93-3D5D-4363-88DC-5D6017A2E6F5 wds:Q90841022-D980E2F1-D432-46D9-933F-998D21EA892D wds:Q90841022-E599E356-50A1-44CE-AE0F-9C0DDC2718D9 wds:Q90841022-EE3172E8-1B9E-48DD-991D-0E40836D0E7C wds:Q90841022-F37AF612-8D67-4B91-9624-EE53BE121FC1
cites work	Genomic insights that advance the species definition for prokaryotes MALDI TOF MS profiling of bacteria at the strain level: a review Toward a more robust assessment of intraspecies diversity, using fewer genetic markers Repetitive extragenic palindromic sequences: a major component of the bacterial genome Listeria monocytogenes: a multifaceted model SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing Kraken: ultrafast metagenomic sequence classification using exact alignments Strain-level microbial epidemiology and population genomics from shotgun metagenomics OrthoANI: An improved algorithm and software for calculating average nucleotide identity KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies. Subtyping of Clostridium difficile PCR ribotype 001 by REP-PCR and PFGE Search and clustering orders of magnitude faster than BLAST Assessing the performance of the Oxford Nanopore Technologies MinION. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation Trimmomatic: a flexible trimmer for Illumina sequence data Cutadapt removes adapter sequences from high-throughput sequencing reads Applicability of rep-PCR fingerprinting for identification of Lactobacillus species. 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls VSEARCH: a versatile open source tool for metagenomics Murine gut microbiota and transcriptome are diet dependent Applications of the rep-PCR DNA fingerprinting technique to study microbial diversity, ecology and evolution Matrix-assisted laser desorption ionization-time of flight (maldi-tof) mass spectrometry for detection of antibiotic resistance mechanisms: from research to routine diagnosis Microbial DNA typing by automated repetitive-sequence-based PCR. The Salmonella enterica pan-genome Molecular characterization of Salmonella isolates by REP-PCR and RAPD analysis. Comparative efficacy of five different rep-PCR methods to discriminate Escherichia coli populations in aquatic environments. Strategy to detect and identify Bartonella species in routine clinical laboratory yields Bartonella henselae from human immunodeficiency virus-positive patient and unique Bartonella strain from his cat Centrifuge: rapid and sensitive classification of metagenomic sequences Validation of the (GTG)(5)-rep-PCR fingerprinting technique for rapid classification and identification of acetic acid bacteria, with a focus on isolates from Ghanaian fermented cocoa beans. Discriminatory Indices of Typing Methods for Epidemiologic Analysis of Contemporary Staphylococcus aureus Strains Predicting Salmonella enterica serotypes by repetitive sequence-based PCR. Hybrid assembly with long and short reads improves discovery of gene family expansions Genetic relatedness between Listeria monocytogenes isolates from seafood and humans using PFGE and REP-PCR. Molecular characterisation of avian Pasteurella multocida isolates from Australia and Vietnam by REP-PCR and PFGE Microbiology: the road to strain-level identification
author name string	wds:Q90841022-4B2A0708-C637-43F5-B4E6-158EA055B99F wds:Q90841022-881121E7-9307-4A49-BB17-0F5770E246D7 wds:Q90841022-90B2DE54-45B5-4160-A365-C24211FEBF36 wds:Q90841022-A478C29F-090E-43E8-9778-542753CF998C wds:Q90841022-AAB80177-4947-44F6-98BC-50CB1FE4213D wds:Q90841022-E78BC541-7C61-40AA-96E4-8D73A52AE404
author name string	Dennis S Nielsen Maciej Sykulski Łukasz Krych Morten B Mikkelsen Daniel N Moesby Laura M Forero-Junco
rdfs:label	DNA enrichment and tagmentation method for species-level identification and strain-level differentiation using ON-rep-seq (en) DNA enrichment and tagmentation method for species-level identification and strain-level differentiation using ON-rep-seq (nl)
skos:prefLabel	DNA enrichment and tagmentation method for species-level identification and strain-level differentiation using ON-rep-seq (en) DNA enrichment and tagmentation method for species-level identification and strain-level differentiation using ON-rep-seq (nl)
name	DNA enrichment and tagmentation method for species-level identification and strain-level differentiation using ON-rep-seq (en) DNA enrichment and tagmentation method for species-level identification and strain-level differentiation using ON-rep-seq (nl)
author	wds:Q90841022-6D9A08CA-268D-4DFE-A669-221656216238 wds:Q90841022-BC3302C3-78B3-4507-B2DC-345971014CD7
author	Morten Arendt Rasmussen

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