About: Dave Thirumalai

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An Entity of Type : wikibase:Item, within Data Space : wikidata.demo.openlinksw.com associated with source document(s)

researcher in soft-matter physics at UT Austin

Attributes	Values
rdf:type	Item
description	ikertzailea (eu) 연구원 (ko) 研究者 (ja) wetenschapper (nl) дослідник (uk) researcher in soft-matter physics at UT Austin (en)
rdfs:label	D Thirumalai (nl) Dave Thirumalai (en)
skos:prefLabel	D Thirumalai (nl) Dave Thirumalai (en)
name	D Thirumalai (nl) Dave Thirumalai (en)
given name	wds:Q88596136-4D01D427-DEC9-4ED7-BF4D-149C5B1F2707
given name	Dave
instance of	wds:Q88596136-44E53331-C909-480D-96C1-6AC36225B4D8
instance of	Homo sapiens
award received	wds:Q88596136-91125a61-4500-74db-db8e-5707836b88e7 wds:Q88596136-eabc8640-4003-b2a9-7f45-346f6b523ab2
award received	Oesper Award Irving Langmuir Award in Chemical Physics
Academic Tree ID	wds:Q88596136-dc440160-4a72-c544-8797-2204f3adbd0d
Academic Tree ID	72321
Google Scholar author ID	wds:Q88596136-539ea470-4d4a-540d-ec32-ad7f3ace0511
Google Scholar author ID	sNiAY9IAAAAJ
skos:altLabel	Devarajan Thirumalai (en)
occupation	wds:Q88596136-C42F3DDF-EAA4-4D68-8318-09514EA6C56F
employer	wds:Q88596136-71d7e044-4898-fca4-abb3-e608a56cabeb wds:Q88596136-cc29d1a2-4da6-77ff-88cc-142101f0903b
sex or gender	wds:Q88596136-58bdb459-4acd-c496-5ad7-026753369328
country of citizenship	wds:Q88596136-44cee07a-4588-37af-f627-11f1c94c52d2
educated at	wds:Q88596136-94febd80-4aef-2828-ce4f-2e4f91c5bdf3
family name	wds:Q88596136-9160aeb1-4ac6-f4a9-1363-9936855e139c
occupation	researcher
employer	University of Maryland University of Texas at Austin
sex or gender	male
country of citizenship	United States of America
educated at	University of Minnesota
family name	Thirumalai
ORCID iD	wds:Q88596136-E2240740-69FD-4543-878B-90324389C93C
Dimensions author ID	wds:Q88596136-EDE8408F-FD44-46A1-A828-E81D55B4C2A9
ORCID iD	https://orcid.org/0000-0003-1801-5924
ORCID iD	0000-0003-1801-5924
Dimensions author ID	010771520233.69
is about of	https://www.wikidata.org/wiki/Special:EntityData/Q88596136
is author of	RNA and protein folding: common themes and variations Charge density of divalent metal cations determines RNA stability Role of counterion condensation in folding of the Tetrahymena ribozyme. I. Equilibrium stabilization by cations Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations Development of novel statistical potentials for protein fold recognition Coupling between normal modes drives protein conformational dynamics: illustrations using allosteric transitions in myosin II Allosteric transitions in the chaperonin GroEL are captured by a dominant normal mode that is most robust to sequence variations. Deciphering the timescales and mechanisms of protein folding using minimal off-lattice models Factors governing the foldability of proteins Mechanical unfolding of RNA: from hairpins to structures with internal multiloops Ribosome exit tunnel can entropically stabilize alpha-helices Virtual atom representation of hydrogen bonds in minimal off-lattice models of alpha helices: effect on stability, cooperativity and kinetics Ergodic behavior in supercooled liquids and in glasses Role of water in protein aggregation and amyloid polymorphism Effects of pH on proteins: predictions for ensemble and single-molecule pulling experiments RNA tertiary interactions mediate native collapse of a bacterial group I ribozyme Coupling between allosteric transitions in GroEL and assisted folding of a substrate protein Kinetics of peptide folding: computer simulations of SYPFDV and peptide variants in water. Folding of the Tetrahymena ribozyme by polyamines: importance of counterion valence and size. Probing the instabilities in the dynamics of helical fragments from mouse PrPC. Navigating the folding routes Early events in RNA folding Symmetric connectivity of secondary structure elements enhances the diversity of folding pathways Emerging ideas on the molecular basis of protein and peptide aggregation Intermediates and transition states in protein folding. Entropic stabilization of proteins by TMAO Urea-induced denaturation of preQ1-riboswitch Dynamics of allosteric transitions in GroEL. Toward a molecular theory of early and late events in monomer to amyloid fibril formation Annealing function of GroEL: structural and bioinformatic analysis. Residues in substrate proteins that interact with GroEL in the capture process are buried in the native state Collapse kinetics and chevron plots from simulations of denaturant-dependent folding of globular proteins From mechanical folding trajectories to intrinsic energy landscapes of biopolymers. Dynamics of Random Hydrophobic-Hydrophilic Copolymers with Implications for Protein Folding p-spin-interaction spin-glass models: Connections with the structural glass problem Relative Stability of Helices Determines the Folding Landscape of Adenine Riboswitch Aptamers Refolding dynamics of stretched biopolymers upon force quench. Principles governing oligomer formation in amyloidogenic peptides Orientational potentials extracted from protein structures improve native fold recognition Kinetics and thermodynamics of folding in model proteins Criterion that determines the foldability of proteins Role of counterion condensation in folding of the Tetrahymena ribozyme. II. Counterion-dependence of folding kinetics Cooperativity in protein folding: from lattice models with sidechains to real proteins Can energy landscape roughness of proteins and RNA be measured by using mechanical unfolding experiments? Revealing the bifurcation in the unfolding pathways of GFP by using single-molecule experiments and simulations Chaperonin-facilitated protein folding: optimization of rate and yield by an iterative annealing mechanism Dynamics of unbinding of cell adhesion molecules: transition from catch to slip bonds Allosteric transitions in biological nanomachines are described by robust normal modes of elastic networks Chaperonin-mediated protein folding The nucleation-collapse mechanism in protein folding: evidence for the non-uniqueness of the folding nucleus Modeling the role of disulfide bonds in protein folding: entropic barriers and pathways. Determination of network of residues that regulate allostery in protein families using sequence analysis Allostery wiring diagrams in the transitions that drive the GroEL reaction cycle Allosteric communication in dihydrofolate reductase: signaling network and pathways for closed to occluded transition and back.

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