About: The contributions of replication orientation, gene direction, and signal sequences to base-composition asymmetries in bacterial genomes

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scientific article published on 01 March 2000

Attributes	Values
rdf:type	Item
description	wetenschappelijk artikel (nl) wüsseschaftlicher Artikel, wo im März 2000 veröffentlicht worden isch (gsw) im März 2000 veröffentlichter wissenschaftlicher Artikel (de) наукова стаття, опублікована в березні 2000 (uk) artículu científicu espublizáu en marzu de 2000 (ast) scientific article published on 01 March 2000 (en)
publication date	wds:Q73643707-E4AA8BB8-047A-4D66-8238-5F7E64E11DEB
publication date	2000-03-01 00:00:00Z (xsd:dateTime)
exact match	wds:Q73643707-CA0E59E9-0976-4197-8E0E-0C2CB27C87CD
exact match	https://scigraph.springernature.com/pub.10.1007/s002399910029
author name string	wds:Q73643707-7D7099DA-39BC-47BA-908C-FACD13458C7F wds:Q73643707-9FBC2A9C-539B-4E3F-B6E7-0C0AC6A6DE7E
author name string	R A Collins E R Tillier
rdfs:label	The contributions of replication orientation, gene direction, and signal sequences to base-composition asymmetries in bacterial genomes (en) The contributions of replication orientation, gene direction, and signal sequences to base-composition asymmetries in bacterial genomes (nl)
skos:prefLabel	The contributions of replication orientation, gene direction, and signal sequences to base-composition asymmetries in bacterial genomes (en) The contributions of replication orientation, gene direction, and signal sequences to base-composition asymmetries in bacterial genomes (nl)
name	The contributions of replication orientation, gene direction, and signal sequences to base-composition asymmetries in bacterial genomes (en) The contributions of replication orientation, gene direction, and signal sequences to base-composition asymmetries in bacterial genomes (nl)
title	wds:Q73643707-78CC9291-E1E4-4087-B5EE-FB2B13C03940
title	The contributions of replication orientation, gene direction, and signal sequences to base-composition asymmetries in bacterial genomes (en)
page(s)	wds:Q73643707-E2ECC818-B936-4BD6-A09B-BC52DA57F374
page(s)	249-257
instance of	wds:Q73643707-E5B96A85-08BC-4D62-B299-1F87805F2582
instance of	scholarly article
PubMed ID	wds:Q73643707-EAC37639-A093-4511-A1F7-C52E51B9A3E6
PubMed ID	http://rdf.ncbi.nlm.nih.gov/pubchem/reference/10754068
PubMed ID	10754068
published in	wds:Q73643707-1D81FF0D-5C94-484E-8E03-309F4C70BA3C
published in	Journal of Molecular Evolution
issue	wds:Q73643707-CD8C6753-3731-4C9B-9271-051248D5B833
volume	wds:Q73643707-A7E6E6E8-B143-4547-8E88-54A78908E47F
issue	3
volume	50
DOI	wds:Q73643707-74F7397C-547C-4FC6-AF77-D20556C47D78
DOI	http://dx.doi.org/10.1007/S002399910029
DOI	10.1007/S002399910029
Dimensions Publication ID	wds:Q73643707-71CF43EA-CB72-4402-AE08-40A0E9F0B4AF
Dimensions Publication ID	1017326137
is about of	https://www.wikidata.org/wiki/Special:EntityData/Q73643707
is cites work of	Forces that influence the evolution of codon bias Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes Pyrococcus genome comparison evidences chromosome shuffling-driven evolution Similar compositional biases are caused by very different mutational effects. Asymmetric directional mutation pressures in bacteria Mining Bacillus subtilis chromosome heterogeneities using hidden Markov models Strand compositional asymmetries of nuclear DNA in eukaryotes. Replication-associated strand asymmetries in mammalian genomes: toward detection of replication origins Composition strand asymmetries in prokaryotic genomes: mutational bias and biased gene orientation. Molecular evolution meets the genomics revolution Genome rearrangement by replication-directed translocation Where does bacterial replication start? Rules for predicting the oriC region The mitochondrial genome of a deep-sea bamboo coral (Cnidaria, Anthozoa, Octocorallia, Isididae): genome structure and putative origins of replication are not conserved among octocorals. Analysis of bilateral inverse symmetry in whole bacterial chromosomes Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution Strand bias structure in mouse DNA gives a glimpse of how chromatin structure affects gene expression Transcription-associated mutational asymmetry in mammalian evolution RecBCD enzyme and the repair of double-stranded DNA breaks Complex mechanism of site-specific DNA replication termination in fission yeast CAGO: a software tool for dynamic visual comparison and correlation measurement of genome organization Quantitative analysis of mutation and selection pressures on base composition skews in bacterial chromosomes Polarisation of prokaryotic chromosomes Distinctive architecture of the chloroplast genome in the chlorophycean green alga Stigeoclonium helveticum The chloroplast genome of the green alga Schizomeris leibleinii (Chlorophyceae) provides evidence for bidirectional DNA replication from a single origin in the chaetophorales Global features of sequences of bacterial chromosomes, plasmids and phages revealed by analysis of oligonucleotide usage patterns Linking the DNA strand asymmetry to the spatio-temporal replication program. I. About the role of the replication fork polarity in genome evolution Linking the DNA strand asymmetry to the spatio-temporal replication program: II. Accounting for neighbor-dependent substitution rates Genometrics as an essential tool for the assembly of whole genome sequences: the example of the chromosome of Bifidobacterium longum NCC2705 Compositional bias in DNA. The Complete Genome Sequence of Bacillus licheniformis DSM13, an Organism with Great Industrial Potential High correlation between the turnover of nucleotides under mutational pressure and the DNA composition Optimization of Mutation Pressure in Relation to Properties of Protein-Coding Sequences in Bacterial Genomes The orientation bias of Chi sequences is a general tendency of G-rich oligomers. Trends in the codon usage patterns of Chromohalobacter salexigens genes New criteria for selecting the origin of DNA replication in Wolbachia and closely related bacteria PromBase: a web resource for various genomic features and predicted promoters in prokaryotic genomes Genomic comparison of archaeal conjugative plasmids from Sulfolobus Strikingly bacteria-like and gene-rich mitochondrial genomes throughout jakobid protists A study on the correlation of nucleotide skews and the positioning of the origin of replication: different modes of replication in bacterial species Separate base usages of genes located on the leading and lagging strands in Chlamydia muridarum revealed by the Z curve method Asymmetric Context-Dependent Mutation Patterns Revealed through Mutation-Accumulation Experiments Atypical at skew in Firmicute genomes results from selection and not from mutation The factors shaping synonymous codon usage in the genome of Burkholderia mallei. Separating the effects of mutation and selection in producing DNA skew in bacterial chromosomes Quantitative analysis of replication-related mutation and selection pressures in bacterial chromosomes and plasmids using generalised GC skew index Gene expressivity is the main factor in dictating the codon usage variation among the genes in Pseudomonas aeruginosa. Incidence of genome structure, DNA asymmetry, and cell physiology on T-DNA integration in chromosomes of the phytopathogenic fungus Leptosphaeria maculans. Differences in Codon Usage Bias between Photosynthesis-Related Genes and Genetic System-Related Genes of Chloroplast Genomes in Cultivated and Wild Solanum Species Complete chloroplast genomes of two Siraitia Merrill species: Comparative analysis, positive selection and novel molecular marker development Identification of novel growth phase- and media-dependent small non-coding RNAs in Streptococcus pyogenes M49 using intergenic tiling arrays Codon usage comparison of novel genes in clinical isolates of Haemophilus influenzae Evolutionary analysis of mitogenomes from parasitic and free-living flatworms Strand compositional asymmetries in vertebrate large genes Quantitative analysis of correlation between AT and GC biases among bacterial genomes A novel skew analysis reveals substitution asymmetries linked to genetic code GC-biases and PolIII a-subunit isoforms Optimization of amino acid replacement costs by mutational pressure in bacterial genomes The Impact of Selection at the Amino Acid Level on the Usage of Synonymous Codons. Measures of compositional strand bias related to replication machinery and its applications

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