About: Optimization strategies for fast detection of positive selection on phylogenetic trees

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About: Optimization strategies for fast detection of positive selection on phylogenetic trees Goto Sponge NotDistinct Permalink

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scientific article published on 23 January 2014

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rdf:type	Item
description	videnskabelig artikel (da) article científic (ca) articolo scientifico (it) artigo científico (pt) bilimsel makale (tr) vedecký článok (sk) vetenskaplig artikel (sv) vědecký článek (cs) wetenschappelijk artikel (nl) wissenschaftlicher Artikel (de) научни чланак (sr) article scientifique (fr) artículu científicu espublizáu en 2014 (ast) наукова стаття, опублікована в січні 2014 (uk) scientific article published on 23 January 2014 (en) مقالة علمية نشرت في 23 يناير 2014 (ar)
publication date	wds:Q37695450-5EA4F81B-4C46-4A05-83D5-79F4FFE1A893
publication date	2014-01-23 00:00:00Z (xsd:dateTime)
language of work or name	wds:Q37695450-8C8015C9-AC61-456A-92EE-7C49B949FB89
language of work or name	English
cites work	wds:Q37695450-00B4AE8C-E99F-4769-9611-D21DA30064DD wds:Q37695450-0E061292-D9E3-485C-A433-6E2E0D341853 wds:Q37695450-26BD526A-A67D-4FD8-A133-87C749803BBE wds:Q37695450-36D48298-DE98-4797-84E6-27362060A4EB wds:Q37695450-41A056D8-0BF6-4C87-A799-85F482F88199 wds:Q37695450-4AC4599C-6B1A-45F4-8E86-FF0A788F4FA8 wds:Q37695450-51E3183B-A419-4175-85F6-517C4A4BFA9A wds:Q37695450-5297DA1F-322B-4355-889D-FE10E4B6A92E wds:Q37695450-5D05D04D-69CA-4AE4-9E36-373F1517CBA1 wds:Q37695450-697101B7-0500-425A-B6F1-73811A348232 wds:Q37695450-6D2A89CD-A4DD-442C-8908-619FC9EA6850 wds:Q37695450-6D806662-A5E7-4987-8773-1D7EC1942D2E wds:Q37695450-7250CA85-FCF6-40BC-A3B9-06F0D5039EF2 wds:Q37695450-7DDADB76-4F48-4F7E-9C46-B6F129562E0A wds:Q37695450-90CCB3E5-8530-4464-A588-1FE3C2F44D4B wds:Q37695450-9BD282FB-9218-4923-A30E-F00BE487B9E1 wds:Q37695450-A9741FA7-595C-4D69-8BA4-DBC7D4DD925A wds:Q37695450-C0B47F28-0127-48AA-8365-E00F18F28152 wds:Q37695450-C5F7C110-821E-43B1-AC9F-7D27B78CF1FB wds:Q37695450-C90C73A3-AF43-4CCB-9447-E72572160F4C wds:Q37695450-E41CEBC1-9826-47D0-9C8A-53272B40DF66 wds:Q37695450-E63E04F5-770A-473C-8A2C-6129A8519857 wds:Q37695450-F36B10F2-7D03-431E-AB64-5AA77BF17723 wds:Q37695450-FA34171F-B00A-485C-8745-0C6B0DCA8738
cites work	A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process Selectome: a database of positive selection Detecting individual sites subject to episodic diversifying selection Phylogenetic inference using whole genomes Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level Evolutionary trees from DNA sequences: A maximum likelihood approach Bayes empirical bayes inference of amino acid sites under positive selection Nomenclature for incompletely specified bases in nucleic acid sequences: recommendations 1984. Patterns of positive selection in six Mammalian genomes Phylogenetic mixture models can reduce node-density artifacts Efficient selection of branch-specific models of sequence evolution Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes Investigating protein-coding sequence evolution with probabilistic codon substitution models Synonymous substitutions substantially improve evolutionary inference from highly diverged proteins Fast Bayesian choice of phylogenetic models: prospecting data augmentation-based thermodynamic integration New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models. Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge trees Column sorting: rapid calculation of the phylogenetic likelihood function. A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection AxML: a fast program for sequential and parallel phylogenetic tree calculations based on the maximum likelihood method. Phylogenetic estimation with partial likelihood tensors Phylogenetic code in the cloud - can it meet the expectations?
author name string	wds:Q37695450-151C9166-66DB-4F42-8D60-65A986A6ABBE wds:Q37695450-7E3924FD-A779-4DF0-BFAF-13333260D958 wds:Q37695450-CA30920C-9BBE-4CD1-A652-F32FD33950A9
author name string	Alexandros Stamatakis Hannes Schabauer Mario Valle
rdfs:label	Optimization strategies for fast detection of positive selection on phylogenetic trees (en) Optimization strategies for fast detection of positive selection on phylogenetic trees (nl) Optimization strategies for fast detection of positive selection on phylogenetic trees (ast)
skos:prefLabel	Optimization strategies for fast detection of positive selection on phylogenetic trees (en) Optimization strategies for fast detection of positive selection on phylogenetic trees (nl) Optimization strategies for fast detection of positive selection on phylogenetic trees (ast)
name	Optimization strategies for fast detection of positive selection on phylogenetic trees (en) Optimization strategies for fast detection of positive selection on phylogenetic trees (nl) Optimization strategies for fast detection of positive selection on phylogenetic trees (ast)
author	wds:Q37695450-2598A42C-2427-47E9-8A1F-CB32D233DE3C wds:Q37695450-49E53ECC-D77F-46BD-8D9A-A7BC215E880A wds:Q37695450-98EF0F2B-0B94-467E-B55E-4B956A4635CA wds:Q37695450-F170214D-422E-4151-9402-E07F40890680
author	Marc Robinson-Rechavi Heinz Stockinger Nicolas Salamin Christoph Pacher
title	wds:Q37695450-9DA06E55-A7B0-4312-8383-FD93424AC984
title	Optimization strategies for fast detection of positive selection on phylogenetic trees (en)
page(s)	wds:Q37695450-8070F7EF-DC26-4BC7-95D5-6214ED549203
page(s)	1129-1137
instance of	wds:Q37695450-B9436E08-AAF2-4B6C-9A49-34265781B5D9
instance of	scholarly article
main subject	wds:Q37695450-C64A0169-725F-43AD-BAEF-E0C6EB73EC90
main subject	phylogenetics

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