About: CAVER: a new tool to explore routes from protein clefts, pockets and cavities

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About: CAVER: a new tool to explore routes from protein clefts, pockets and cavities Goto Sponge NotDistinct Permalink

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scientific article (publication date: 22 June 2006)

Attributes	Values
rdf:type	Item
description	article scientifique publié en 2006 (fr) artículu científicu espublizáu en 2006 (ast) наукова стаття, опублікована в червні 2006 (uk) 2006 թվականի հունիսին հրատարակված գիտական հոդված (hy) 2006 թուականի Յունիսին հրատարակուած գիտական յօդուած (hyw) مقالة علمية (نشرت في 22-6-2006) (ar) wetenschappelijk artikel (gepubliceerd op 2006/06/22) (nl) im Juni 2006 veröffentlichter wissenschaftlicher Artikel (de) scientific article (publication date: 22 June 2006) (en)
publication date	wds:Q29619781-92895EA7-E5CF-4F8F-84E8-0DDC7895DB90
publication date	2006-06-22 00:00:00Z (xsd:dateTime)
language of work or name	wds:Q29619781-A1900EC2-B788-402F-AF98-EE6092E69942
language of work or name	English
exact match	wds:Q29619781-1A13C655-B3DF-46EF-AD35-8F409E08B5D5
exact match	https://scigraph.springernature.com/pub.10.1186/1471-2105-7-316
cites work	wds:Q29619781-08984B4E-0DE6-48E3-A87E-3FCA77C751C4 wds:Q29619781-1C7A547C-2745-4008-98F5-1F03C6E98B17 wds:Q29619781-1DEDE921-127D-4A3D-B326-E4A723A50256 wds:Q29619781-491C9D4A-5DA3-4537-A2D3-5BD373159276 wds:Q29619781-4A108D60-587A-4CA2-8FA2-EABDA4A35B6F wds:Q29619781-6063C6FA-3E53-4585-9267-AC33F8F5BFF9 wds:Q29619781-60EDEEDC-FA77-4CD0-A7FC-234E1EE1B2F6 wds:Q29619781-63BBD58D-E2A3-4279-9565-0495765355D1 wds:Q29619781-66DD4022-7123-4CEB-BFA1-C4789A7C3685 wds:Q29619781-6C1A01A5-9716-4307-ADC7-65597071FE23 wds:Q29619781-8BA49FC5-AE37-4AC8-8359-3AD4E18A13E1 wds:Q29619781-8BF76272-9065-4905-B274-213E747AC3ED wds:Q29619781-91DC5B93-EFFC-449F-B398-37A9DDB79A4C wds:Q29619781-93F2DF07-06AB-4C45-853B-5982D281E11C wds:Q29619781-9FF6ECF1-1D88-49AE-838C-D5E09F843605 wds:Q29619781-A4C13A5F-2023-4B0A-9069-5B51A79BD69F wds:Q29619781-A501BEA8-3778-4D6D-B26A-EA6119CE1AC4 wds:Q29619781-C55582A7-31FE-4AFA-938C-4567EF2E3C5C wds:Q29619781-CACFC555-6A20-485A-A4D1-100314AC4D9C wds:Q29619781-CDB4EAD3-5F12-4573-9386-C1B2017329AD wds:Q29619781-D0196C6F-4B96-40A2-9110-A598F0A9A359 wds:Q29619781-D5CFD0AF-2992-4D62-9C95-341919F7CE24 wds:Q29619781-EC767ED9-B4E4-4B91-A490-2C23B05A0831
cites work	Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 A resolution: dynamics of catalytic residues Crystal structure of haloalkane dehalogenase: an enzyme to detoxify halogenated alkanes Detection, delineation, measurement and display of cavities in macromolecular structures Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites. The case for open-source software in drug discovery Haloalkane dehalogenase from Xanthobacter autotrophicus GJ10 refined at 1.15 A resolution Crystallographic and kinetic evidence of a collision complex formed during halide import in haloalkane dehalogenase Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26 Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product- and water-mediated inhibition Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates Kinetic characterization and X-ray structure of a mutant of haloalkane dehalogenase with higher catalytic activity and modified substrate range Kinetic analysis and X-ray structure of haloalkane dehalogenase with a modified halide-binding site Functionally relevant motions of haloalkane dehalogenases occur in the specificity-modulating cap domains Structure-specificity relationships for haloalkane dehalogenases Molecular dynamics of mouse acetylcholinesterase complexed with huperzine A. Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel. Acetylcholinesterase: enhanced fluctuations and alternative routes to the active site in the complex with fasciculin-2. Automatic centerline extraction for virtual colonoscopy. Haloalkane dehalogenases: structure of a Rhodococcus enzyme Crystallographic and fluorescence studies of the interaction of haloalkane dehalogenase with halide ions. Studies with halide compounds reveal a halide binding site in the active site Refined X-ray structures of haloalkane dehalogenase at pH 6.2 and pH 8.2 and implications for the reaction mechanism Crystallographic analysis of the catalytic mechanism of haloalkane dehalogenase
author name string	wds:Q29619781-1C45F083-4D1B-448A-B0E9-0E9312B679F5 wds:Q29619781-527868C5-3BD8-41FF-9373-CD2C46483B70 wds:Q29619781-8D1FC052-5991-40DA-BF30-2A30D4C8969F wds:Q29619781-8E81EF56-6034-4892-B40E-1ADCFDDA2629 wds:Q29619781-94C75BD0-37E9-4D63-ACCA-8EDF29C94559 wds:Q29619781-CF12B2BB-8D05-4BEF-BC26-55381784085D
OpenCitations bibliographic resource ID	wds:Q29619781-5F493D58-7116-4ACE-8C06-51F5026DCBAC
OpenCitations bibliographic resource ID	https://w3id.org/oc/corpus/br/3644273
author name string	Banás P Damborský J Koca J Kosinová P Otyepka M Petrek M
OpenCitations bibliographic resource ID	3644273
rdfs:label	CAVER: a new tool to explore routes from protein clefts, pockets and cavities (en) CAVER: a new tool to explore routes from protein clefts, pockets and cavities (ast)
skos:prefLabel	CAVER: a new tool to explore routes from protein clefts, pockets and cavities (en) CAVER: a new tool to explore routes from protein clefts, pockets and cavities (ast)
name	CAVER: a new tool to explore routes from protein clefts, pockets and cavities (en) CAVER: a new tool to explore routes from protein clefts, pockets and cavities (ast)
title	wds:Q29619781-03A1CDEE-BB87-49CF-885A-E49C2386A6CE
title	CAVER: a new tool to explore routes from protein clefts, pockets and cavities (en)
page(s)	wds:Q29619781-549C8FDA-7F75-40A4-93C7-5538B4F7BBFB
page(s)	316
instance of	wds:Q29619781-0c19b32a-9a5a-4470-835d-aa7c53c6f466 wds:Q29619781-CBE6AFB0-9E88-4792-A451-D7D9DDAB1079
instance of	review article scholarly article
PubMed ID	wds:Q29619781-05A38C4D-C11C-4CFA-B186-29510D5BA566
PubMed ID	http://rdf.ncbi.nlm.nih.gov/pubchem/reference/16792811
PubMed ID	16792811
DBLP publication ID	wds:Q29619781-44EF6A6A-7CCC-4AE1-8DF9-0C2D887BC1CB
DBLP publication ID	https://dblp.org/rec/journals/bmcbi/PetrekOBKKD06
DBLP publication ID	journals/bmcbi/PetrekOBKKD06
published in	wds:Q29619781-836ABC52-B722-45F6-BE8C-F3BBD2C43686
published in	BMC Bioinformatics
volume	wds:Q29619781-A2E77B71-4FA1-4F3B-8AE9-56C6A1492296

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