About: Improved free-energy parameters for predictions of RNA duplex stability

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scientific article (publication date: December 1986)

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description	artículu científicu espublizáu en 1986 (ast) 1986年學術文章 (zh) 1986 թվականի դեկտեմբերին հրատարակված գիտական հոդված (hy) 1986 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած (hyw) наукова стаття, опублікована в грудні 1986 (uk) مقالة علمية (نشرت في ديسمبر 1986) (ar) article publié dans les Proceedings of the National Academy of Sciences of the United States of America (fr) wetenschappelijk artikel (gepubliceerd in 1986-12) (nl) im Dezember 1986 veröffentlichter wissenschaftlicher Artikel (de) scientific article (publication date: December 1986) (en)
publication date	wds:Q29618274-C508475A-3D70-462D-A8B8-FCAFC0332371
publication date	1986-12-01 00:00:00Z (xsd:dateTime)
language of work or name	wds:Q29618274-060E3007-0C16-4079-85C2-070D035B4F9E
language of work or name	English
cites work	wds:Q29618274-01C1E333-F761-4948-B406-E39E6D92458E wds:Q29618274-03A58D11-89CB-4E7B-84E6-973F77EA7ABD wds:Q29618274-06999DB0-D354-4982-91AC-FCEED530B639 wds:Q29618274-0D7AB422-5811-40CF-A1A5-7B45130F9D1E wds:Q29618274-0E61DB08-DDE0-45B2-A978-FB2199A9750A wds:Q29618274-0F32C6D3-7801-4C9D-B92E-E0BDDB6F60B7 wds:Q29618274-110C9990-ECD6-4A79-BCCB-8C6ECC2AE615 wds:Q29618274-1516D6A5-29C0-4EC0-9028-E3965972A7FF wds:Q29618274-1C9AAE16-7843-4510-A3F6-C2B9DDA44AD2 wds:Q29618274-23B3A104-9622-4335-9133-7629E61A397F wds:Q29618274-2978D4CE-90CD-4014-86C0-C680CC0EC8E0 wds:Q29618274-2EA0D5FC-6E6C-4BE0-985E-CEF5DBAD6BED wds:Q29618274-3037A7EB-A72A-4F68-A861-2C40E5080812 wds:Q29618274-32E78083-207C-4C1F-87CC-70FDFF1E41A9 wds:Q29618274-45E4C556-B2EE-46E8-9AE7-DF6A7F3303E0 wds:Q29618274-4829354B-CCAD-4F87-A3D1-2C33F53106D0 wds:Q29618274-4E0DA6B5-39B9-4E24-9296-242DB544092E wds:Q29618274-6015F040-6C25-4319-86D1-1B96C4294801 wds:Q29618274-601E08F9-142D-403B-AEF7-92BA5DA7D63C wds:Q29618274-601E4C83-7118-4134-BBBF-34BD27D69E5C wds:Q29618274-709C5AA6-BD7A-459B-9D3A-A9E94C22D159 wds:Q29618274-82F9BE05-149D-4547-81A0-A728586C0632 wds:Q29618274-8DF966DD-8E47-4CD3-9B1B-04979AE4AD13 wds:Q29618274-9471408B-3E41-4D25-9A24-15E651B63A82 wds:Q29618274-962B0C29-DE61-40C9-81A6-15A7CE502708 wds:Q29618274-A58EAF43-F6C7-41C2-B3C6-F5B3F8CAA0D6 wds:Q29618274-A6552C54-B9D5-4162-B7AF-36CE0709ECFC wds:Q29618274-B0290785-3CC8-43AE-9ADC-050E7760469E wds:Q29618274-B21DD05F-206C-4776-AF46-216D5704428A wds:Q29618274-B419D6C7-4685-4054-AC97-CBE427C8BB61 wds:Q29618274-C8BFD6C8-0783-42F1-92EA-90B9E0EA0A4D wds:Q29618274-D0DFD547-3857-48D0-ACE4-59BB004864EE wds:Q29618274-E31A0DC6-0454-46B9-9309-D38B4654D046 wds:Q29618274-F115E6D9-8C80-437D-AD6B-7B28279185B1 wds:Q29618274-F4776A43-DE86-4B41-AB05-F039D9B7A680 wds:Q29618274-F84CA227-C35E-410B-A728-76C4D05FC815
cites work	Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp Contributions of dangling end stacking and terminal base-pair formation to the stabilities of XGGCCp, XCCGGp, XGGCCYp, and XCCGGYp helixes Solvent effects on the stability of A7U7p. Some simple computational methods to improve the folding of large RNAs Estimation of Secondary Structure in Ribonucleic Acids Stability of ribonucleic acid double-stranded helices Free energy of imperfect nucleic acid helices. II. Small hairpin loops Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids Calorimetric and spectroscopic investigation of the helix-to-coil transition of a ribo-oligonucleotide: rA7U7 Secondary structure of the Tetrahymena ribosomal RNA intervening sequence: structural homology with fungal mitochondrial intervening sequences Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information Improved Estimation of Secondary Structure in Ribonucleic Acids Globin mRNA Sequences: Analysis of Base Pairing and Evolutionary Implications The 3′ terminus of 16S rRNA: secondary structure and interaction with ribosomal protein S1 Calorimetric determination of the heat capacity changes associated with the conformational transitions of polyriboadenylic acid and polyribouridylic acid Conformational Transitions in Viroids and Virusoids: Comparison of Results from Energy Minimization Algorithm and from Experimental Data Relaxation kinetics of dimer formation by self complementary oligonucleotides Self-complementary oligoribonucleotides: effects of helix defects and guanylic acid-cytidylic acid base pairs Free energy contributions of G.U and other terminal mismatches to helix stability Stability of XGCGCp, GCGCYp, and XGCGCYp helixes: an empirical estimate of the energetics of hydrogen bonds in nucleic acids Thermodynamic Studies of RNA Stability DNA and RNA oligomer thermodynamics: the effect of mismatched bases on double-helix stability An energy model that predicts the correct folding of both the tRNA and the 5S RNA molecules Theory of oligonucleotide stabilization. I. The effect of single-strand stacking. Computer-aided prediction of RNA secondary structures Free energy of imperfect nucleic acid helices. 3. Small internal loops resulting from mismatches. Energetics of internal GU mismatches in ribooligonucleotide helixes Thermodynamics of (dG-dC)3 double-helix formation in water and deuterium oxide Heat of the reaction forming the three-stranded poly (A + 2U) complex Helix formation by d(TA) oligomers. II. Analysis of the helix-coli transitions of linear and circular oligomers Conformational transitions in tRNAAsp(brewer's yeast). Thermodynamic, kinetic, and enzymic measurements on oligonucleotide fragments and the intact molecule Small changes in free energy assignments for unpaired bases do not affect predicted secondary structures in single stranded RNA. The Conformational Transitions in Yeast tRNAPhe as Studied with tRNAPhe Fragments Free energy of imperfect nucleic acid helices. I. The bulge defect The effects of base sequence and dangling bases on the stability of short ribonucleic acid duplexes Improved free energies for G.C base-pairs.
author name string	wds:Q29618274-208E3136-6F17-4926-886B-0A5F116914C9 wds:Q29618274-324A915B-B6B9-4DBC-B150-479664CEEB7B wds:Q29618274-3A6D4796-A0FC-41CA-B6B2-E97AC6BC817E wds:Q29618274-3B069F22-CDCD-4A4B-BA1E-28385304F35D wds:Q29618274-425388D7-BD96-43EE-99E0-32387A944A2D wds:Q29618274-F6B698C4-456C-45CD-B855-EBA6BB1D0D06
OpenCitations bibliographic resource ID	wds:Q29618274-136EDE3A-5815-4C44-A8B4-14FE3C286428
OpenCitations bibliographic resource ID	https://w3id.org/oc/corpus/br/3004343
author name string	D H Turner N Sugimoto M H Caruthers S M Freier J A Jaeger

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