About: Ligand binding to protein-binding pockets with wet and dry regions

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scientific journal article

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rdf:type	Item
description	artículu científicu espublizáu en 2011 (ast) vědecký článek publikovaný v roce 2011 (cs) 2011 թվականի հունվարին հրատարակված գիտական հոդված (hy) 2011 թուականի Յունուարին հրատարակուած գիտական յօդուած (hyw) наукова стаття, опублікована в січні 2011 (uk) 2011年學術文章 (zh) im Januar 2011 veröffentlichter wissenschaftlicher Artikel (de) article publié dans les Proceedings of the National Academy of Sciences of the United States of America (fr) scientific journal article (en) wetenschappelijk artikel (gepubliceerd op 2011/01/25) (nl) vedecký článok (publikovaný 2011/01/25) (sk) مقالة علمية (نشرت في 25-1-2011) (ar)
publication date	wds:Q28510503-42455CC7-28B4-447F-BEB6-7FB1AB203273
publication date	2011-01-25 00:00:00Z (xsd:dateTime)
language of work or name	wds:Q28510503-A43EBC5A-524E-4813-9F49-DD29259FB0FB
language of work or name	English
cites work	wds:Q28510503-169A1CF3-89C4-488B-A3A9-8BFAEEB480F0 wds:Q28510503-22CA4375-BF42-454B-8856-675B70D5FC36 wds:Q28510503-2969E9E3-5923-473F-9F14-CFF391BF4D21 wds:Q28510503-326E8CE1-AE09-4BE0-8396-4AF8485BBB7E wds:Q28510503-38F7AAE5-3CBA-4505-A4AE-FCFEA01DF0EA wds:Q28510503-453DB0E4-6D2F-4401-970B-8F441D3B4693 wds:Q28510503-6971D809-400C-4236-AE21-D253525EA4A7 wds:Q28510503-6C04549C-E700-46DD-A541-553E52618C74 wds:Q28510503-73722BD7-631A-4CDB-B805-5CD891A60AF6 wds:Q28510503-73E15F25-EEC8-4793-AC3C-CCB7FB8A8B1A wds:Q28510503-780F4B9B-5BBF-4639-AC64-0F654CB6935D wds:Q28510503-7A913439-C69B-45C7-9F7A-0E549156F503 wds:Q28510503-8A6027AF-C1F5-4C97-B59B-B6448DDB853D wds:Q28510503-8C11DD2C-2EDA-40D2-92E2-351CDDA94BF5 wds:Q28510503-95FC0448-DF75-4FAB-BA50-7CC625845B00 wds:Q28510503-A1259329-3C80-4763-A7D7-656A35433973 wds:Q28510503-A6063B60-1BF0-46AC-A6FB-DC8F9216DAFE wds:Q28510503-AAB9CADF-F2E1-4AE4-816E-7028F774CB0F wds:Q28510503-B5DEEAAC-514B-4E46-A642-2E1194E75619 wds:Q28510503-C312862D-894E-43BF-9AFE-EBCDA201221E wds:Q28510503-C52D2513-0395-4867-B9BF-BB6E51E486D7 wds:Q28510503-D53A0A27-326E-4EDF-8B28-7174589DCFF5 wds:Q28510503-DD921351-3AE9-453B-B78A-FB9CB4E89CA8 wds:Q28510503-E80CFF6B-F98E-44E7-91A2-989EE9A7FE9D wds:Q28510503-FB19C77F-F448-468D-A138-C843E38A742F
cites work	Prediction of the water content in protein binding sites Binding of small-molecule ligands to proteins: "what you see" is not always "what you get". Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes Structure and biochemical analysis of a secretin pilot protein Motifs for molecular recognition exploiting hydrophobic enclosure in protein-ligand binding Structural basis of pheromone binding to mouse major urinary protein (MUP-I) Thermodynamics of binding of 2-methoxy-3-isopropylpyrazine and 2-methoxy-3-isobutylpyrazine to the major urinary protein Van der Waals interactions dominate ligand-protein association in a protein binding site occluded from solvent water. Thermodynamic analysis of binding between mouse major urinary protein-I and the pheromone 2-sec-butyl-4,5-dihydrothiazole Strong solute-solute dispersive interactions in a protein-ligand complex Canonical dynamics: Equilibrium phase-space distributions Comparison of simple potential functions for simulating liquid water Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems Water, water everywhere--except where it matters? High-energy water sites determine peptide binding affinity and specificity of PDZ domains Understanding kinase selectivity through energetic analysis of binding site waters Calculation of protein-ligand binding affinities. Role of the active-site solvent in the thermodynamics of factor Xa ligand binding Computational evaluation of protein-small molecule binding. Structural evidence for adaptive ligand binding of glycolipid transfer protein New hypotheses about the structure-function of proprotein convertase subtilisin/kexin type 9: analysis of the epidermal growth factor-like repeat A docking site using WaterMap Hydrophobic interactions in model enclosures from small to large length scales: non-additivity in explicit and implicit solvent models Dewetting transitions in protein cavities An information theory model of hydrophobic interactions Hydrophobicity Maps of the N-Peptide Coiled Coil of HIV-1 gp41
author name string	wds:Q28510503-388855CD-2390-4E10-BC65-077A7E3E4EDF wds:Q28510503-AE786CBF-5318-47E9-9573-146A3191EE09 wds:Q28510503-F98F15A3-3B51-4ED5-B951-F3E621DD9D5D
OpenCitations bibliographic resource ID	wds:Q28510503-3F49DFBE-E2D9-4D03-B3BB-3CD3AE4D31B5
OpenCitations bibliographic resource ID	https://w3id.org/oc/corpus/br/2760516
author name string	Lingle Wang B. J. Berne R. A. Friesner
OpenCitations bibliographic resource ID	2760516
rdfs:label	Ligand binding to protein-binding pockets with wet and dry regions (en) Ligand binding to protein-binding pockets with wet and dry regions (nl) Ligand binding to protein-binding pockets with wet and dry regions (ast)
skos:prefLabel	Ligand binding to protein-binding pockets with wet and dry regions (en) Ligand binding to protein-binding pockets with wet and dry regions (nl) Ligand binding to protein-binding pockets with wet and dry regions (ast)
name	Ligand binding to protein-binding pockets with wet and dry regions (en) Ligand binding to protein-binding pockets with wet and dry regions (nl) Ligand binding to protein-binding pockets with wet and dry regions (ast)
title	wds:Q28510503-0B5A801D-A4BE-4AB1-B68A-A8E35953D673
title	Ligand binding to protein-binding pockets with wet and dry regions (en)
page(s)	wds:Q28510503-FA96ADF9-5899-4D3F-975E-2F9E46684075
page(s)	1326–1330
instance of	wds:Q28510503-C40568B0-45AA-4E81-802F-E6169BC73CE0
instance of	scholarly article
main subject	wds:Q28510503-360B9927-F579-46EE-8ED7-3E1DDE20B323 wds:Q28510503-99680681-5247-4AE5-B7C4-6E42B61622AC wds:Q28510503-FB4F368C-E2F9-40C3-A12D-DCAE41A7D5C5
main subject	wd:Q21438142 ligand binding binding pocket
PubMed ID	wds:Q28510503-2DAF2EF4-65DF-4F78-A102-15DA6BFCB2AF
PubMed ID	http://rdf.ncbi.nlm.nih.gov/pubchem/reference/21205906
PubMed ID	21205906

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