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R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

Attributes	Values
rdf:type	Item
description	ソフトヱヤ (ryu) projeto no Bioconductor (pt) projeto no Bioconductor (pt-br) R package for visualization and annotation of phylogenetic trees with their covariates and other associated data (en)
rdfs:label	ggtree (en) ggtree (pt) ggtree (pt-br)
skos:prefLabel	ggtree (en) ggtree (pt) ggtree (pt-br)
name	ggtree (en) ggtree (pt) ggtree (pt-br)
described by source	wds:Q112338735-fc7ed4c5-477a-7af7-bd74-893367130034
instance of	wds:Q112338735-48DD1239-5B4A-49B8-B5F0-DFB569A5B49D wds:Q112338735-64F26067-972B-4E9B-AC67-A0DD6A33AA4C wds:Q112338735-f1012b13-4caf-c18d-ad1c-53e1a7bc4802
described by source	ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data
instance of	R package software Bioconductor project
DOI	wds:Q112338735-AFACE924-3E25-48C4-BF83-39F05433BFC0
DOI	http://dx.doi.org/10.18129/B9.BIOC.GGTREE
DOI	10.18129/B9.BIOC.GGTREE
maintained by	wds:Q112338735-6FAD8889-CC8F-4D9F-9541-0B2A8C989A64
maintained by	Guangchuang Yu
copyright license	wds:Q112338735-FFC7D2B0-1F42-4A00-8F7B-A086A54372E7
copyright status	wds:Q112338735-4664BA2F-7073-4117-A0CF-9E1B0D37A2E3
copyright license	Artistic License 2.0
copyright status	copyrighted
programmed in	wds:Q112338735-2A8198B8-5D70-481E-8865-D84247C20923
programmed in	R
Bioconductor project	wds:Q112338735-41AF25DA-2DB6-40AB-91F9-BB4111B64476
Bioconductor project	ggtree
is owl:sameAs of	ggtree
is about of	https://www.wikidata.org/wiki/Special:EntityData/Q112338735
is describes a project that uses of	A horizontally acquired expansin gene increases virulence of the emerging plant pathogen Erwinia tracheiphila Horses in Denmark Are a Reservoir of Diverse Clones of Methicillin-Resistant and -Susceptible Staphylococcus aureus Signatures of cytoplasmic proteins in the exoproteome distinguish community- and hospital-associated methicillin-resistant Staphylococcus aureus USA300 lineages. Evidence of cryptic lineages within a small South American crocodilian: the Schneider's dwarf caiman (Alligatoridae: Caimaninae) Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities Lignin-degrading peroxidases in white-rot fungus Trametes hirsuta 072. Absolute expression quantification of full multigene family Successful fishing for nucleus pulposus progenitor cells of the intervertebral disc across species PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity. Microbial metagenome of urinary tract infection. Dynamic linear models guide design and analysis of microbiota studies within artificial human guts Clarinet (CLA-1), a novel active zone protein required for synaptic vesicle clustering and release. Whole Genome Analyses Suggests that sensu lato Contains Two Additional Novel Genera ( gen. nov., and gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Clustering of Isolates Using MLST and Whole-Genome Phylogenetics and Protein Motif Fingerprinting Dietary energy drives the dynamic response of bovine rumen viral communities. Genome-wide evolutionary dynamics of influenza B viruses on a global scale Adding loci improves phylogeographic resolution in red mangroves despite increased missing data: comparing microsatellites and RAD-Seq and investigating loci filtering. Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis Genomic exploration of sequential clinical isolates reveals a distinctive molecular signature of persistent Staphylococcus aureus bacteraemia Genomic and transcriptomic landscapes of Epstein-Barr virus in extranodal natural killer T-cell lymphoma Characterization of a large cluster of HIV-1 A1 infections detected in Portugal and connected to several Western European countries Improved characterisation of MRSA transmission using within-host bacterial sequence diversity Circulating exosomal miRNA profile during term and preterm birth pregnancies - a longitudinal study Co-circulation of genetically distinct highly pathogenic avian influenza A clade 2.3.4.4 (H5N6) viruses in wild waterfowl and poultry in Europe and East Asia, 2017-18 Australian porcine clonal complex 10 (CC10) Escherichia coli belong to multiple sublineages of a highly diverse global CC10 phylogeny Linking genetic, metabolic, and phenotypic diversity among Saccharomyces cerevisiae strains using multi-omics associations Coinfinder: detecting significant associations and dissociations in pangenomes Environmental variables associated with Nothophaeocryptopus gaeumannii population structure and Swiss needle cast severity in Western Oregon and Washington Campylobacter jejuni Strain Dynamics in a Raccoon (Procyon lotor) Population in Southern Ontario, Canada: High Prevalence and Rapid Subtype Turnover Genomic epidemiology of the commercially important pathogen Renibacterium salmoninarum within the Chilean salmon industry Comparison of Microbiota in Patients Treated by Surgery or Chemotherapy by 16S rRNA Sequencing Reveals Potential Biomarkers for Colorectal Cancer Therapy. Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints Convergent Evolution Driven by Rifampin Exacerbates the Global Burden of Drug-Resistant Staphylococcus aureus. Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers Molecular mechanism of azithromycin resistance among typhoidal Salmonella strains in Bangladesh identified through passive pediatric surveillance Rapid phenotypic evolution in multidrug-resistant Klebsiella pneumoniae hospital outbreak strains Coronaviruses in the Sea A Race against Time: Reduced Azithromycin Susceptibility in Salmonella enterica Serovar Typhi in Pakistan Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico. Evolution and Global Transmission of a Multidrug-Resistant, Community-Associated Methicillin-Resistant Staphylococcus aureus Lineage from the Indian Subcontinent Geography Shapes the Population Genomics of Salmonella enterica Dublin Proposal of a Taxonomic Nomenclature for the Bacillus cereus Group Which Reconciles Genomic Definitions of Bacterial Species with Clinical and Industrial Phenotypes A Genome-Based Species Taxonomy of the Lactobacillus Genus Complex Characterization of Emetic and Diarrheal Strains From a 2016 Foodborne Outbreak Using Whole-Genome Sequencing: Addressing the Microbiological, Epidemiological, and Bioinformatic Challenges Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere A New Phylogenetic Framework for the Animal-Adapted Complex Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events Memory CD4 + T-Cells Expressing HLA-DR Contribute to HIV Persistence During Prolonged Antiretroviral Therapy Four high-quality draft genome assemblies of the marine heterotrophic nanoflagellate Cafeteria roenbergensis Unlocking the relationships among population structure, plant architecture, growing season, and environmental adaptation in Henan wheat cultivars Identification of immune cells and mRNA associated with prognosis of gastric cancer Members of the Genus Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland Clonal expansion across the seas as seen through CPLP-TB database: A joint effort in cataloguing Mycobacterium tuberculosis genetic diversity in Portuguese-speaking countries Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples. Regional Transmission and Reassortment of 2.3.4.4b Highly Pathogenic Avian Influenza (HPAI) Viruses in Bulgarian Poultry 2017/18 Genome of 'Charleston Gray', the principal American watermelon cultivar, and genetic characterization of 1,365 accessions in the U.S. National Plant Germplasm System watermelon collection Distribution of Bacterial α1,3-Galactosyltransferase Genes in the Human Gut Microbiome nosoi: A stochastic agent-based transmission chain simulation framework in r Carrot Juice Fermentations as Man-Made Microbial Ecosystems Dominated by Lactic Acid Bacteria. A SARS-CoV-2 vaccine candidate would likely match all currently circulating variants The difference between cellulolytic 'culturomes' and microbiomes inhabiting two contrasting soil types Lineage specific histories of Mycobacterium tuberculosis dispersal in Africa and Eurasia Full genomic characterization of a porcine rotavirus strain detected in an asymptomatic piglet in Accra, Ghana CeMbio - The Caenorhabditis elegans Microbiome Resource

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