About: limma

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An Entity of Type : wikibase:Item, within Data Space : wikidata.demo.openlinksw.com associated with source document(s)

Bioconductor package

Attributes	Values
rdf:type	Item
description	ソフトヱヤ (ryu) Bioconductor package (en)
rdfs:label	limma (en)
skos:prefLabel	limma (en)
name	limma (en)
described by source	wds:Q112236343-4ab16fb6-465d-9008-a4ba-c31ac12411ca
instance of	wds:Q112236343-93ac0165-49f2-2f74-c7f2-c0f6fe69c1d0 wds:Q112236343-b8a2b6f0-47bf-db8e-ba58-edbd23ac7bea
described by source	limma powers differential expression analyses for RNA-sequencing and microarray studies
instance of	R package software
skos:altLabel	limma R package (en) limma package (en)
funder	wds:Q112236343-62F45B1E-2B93-4830-9FB8-4567F77123AA wds:Q112236343-ACED7F01-765C-4838-B0E1-A33785F1809F
funder	Chan Zuckerberg Initiative
programmed in	wds:Q112236343-e50a468a-4554-e687-182b-f3a5861bd144
Debian stable package	wds:Q112236343-c3451e7f-4952-936a-8a20-9be106e6440f
AUR package	wds:Q112236343-86b3c6c9-4883-6873-b410-08d6ddabfc9e
Repology project name	wds:Q112236343-b45c54c6-4b4d-78be-e52f-661a49803776
programmed in	R
Debian stable package	r-bioc-limma
AUR package	r-limma
Repology project name	r:limma
Bioconductor project	wds:Q112236343-4d09426d-45e5-5c04-22a9-0da6917bcca6
Bioconductor project	limma
is about of	https://www.wikidata.org/wiki/Special:EntityData/Q112236343
is Wikidata property example of	Bioconductor project
is Wikidata property example of	wds:P10892-009424c1-4e65-025b-6017-38592893c668
is main subject of	limma powers differential expression analyses for RNA-sequencing and microarray studies Microarray analysis after RNA amplification can detect pronounced differences in gene expression using limma RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR.
is main subject of	wds:Q37077625-A962B3FB-59D5-429D-A0A4-8FC867A751D1 wds:Q29617988-2A781501-7284-477B-A143-721B71F97CF8 wds:Q33259831-635EF997-B20A-48D3-8813-F19782DFC203
is describes a project that uses of	miR-124 and miR-137 inhibit proliferation of glioblastoma multiforme cells and induce differentiation of brain tumor stem cells Glioblastoma multiforme regional genetic and cellular expression patterns: influence on anatomic and physiologic MR imaging Twa1/Gid8 is a β-catenin nuclear retention factor in Wnt signaling and colorectal tumorigenesis PARP9-DTX3L ubiquitin ligase targets host histone H2BJ and viral 3C protease to enhance interferon signaling and control viral infection Combined CSL and p53 downregulation promotes cancer-associated fibroblast activation Modulation of anti-cancer drug sensitivity through the regulation of mitochondrial activity by adenylate kinase 4. Differential Effector Engagement by Oncogenic KRAS. Next-generation characterization of the Cancer Cell Line Encyclopedia Exploring the Pathological Mechanism of Bladder Cancer Based on Tumor Mutational Burden Analysis Quantitative proteomics analysis of signalosome dynamics in primary T cells identifies the surface receptor CD6 as a Lat adaptor-independent TCR signaling hub Glucose tolerance is associated with differential expression of microRNAs in skeletal muscle: results from studies of twins with and without type 2 diabetes Spatially coordinated kinase signaling regulates local axon degeneration Homeodomain-interacting protein kinase 2 plays an important role in normal terminal erythroid differentiation Human MX2 is an interferon-induced post-entry inhibitor of HIV-1 infection The forkhead transcription factor FOXK2 promotes AP-1-mediated transcriptional regulation Functional targets of the monogenic diabetes transcription factors HNF-1alpha and HNF-4alpha are highly conserved between mice and humans Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2 Profiling circulating microRNA expression in experimental sepsis using cecal ligation and puncture Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer The Hippo kinases LATS1 and 2 control human breast cell fate via crosstalk with ERα The LL-100 panel: 100 cell lines for blood cancer studies. Large-scale genotyping identifies 41 new loci associated with breast cancer risk Rod-Shaped monocytes patrol the brain vasculature and give rise to perivascular macrophages under the influence of proinflammatory cytokines and angiopoietin-2. Integrative analysis of 111 reference human epigenomes Neurological and behavioral abnormalities, ventricular dilatation, altered cellular functions, inflammation, and neuronal injury in brains of mice due to common, persistent, parasitic infection BMI-1 promotes ewing sarcoma tumorigenicity independent of CDKN2A repression Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation Gene expression signatures of morphologically normal breast tissue identify basal-like tumors Mouse models of cystathionine beta-synthase deficiency reveal significant threshold effects of hyperhomocysteinemia DetectiV: visualization, normalization and significance testing for pathogen-detection microarray data A post-transcriptional mechanism pacing expression of neural genes with precursor cell differentiation status. ATXN1 protein family and CIC regulate extracellular matrix remodeling and lung alveolarization The bromodomain protein Brd4 insulates chromatin from DNA damage signalling The miR-144/451 locus is required for erythroid homeostasis Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression IDH1 mutation is sufficient to establish the glioma hypermethylator phenotype Distinct molecular mechanisms underlying clinically relevant subtypes of breast cancer: gene expression analyses across three different platforms Elevated miR-499 levels blunt the cardiac stress response NOTCH1-RBPJ complexes drive target gene expression through dynamic interactions with superenhancers Foxp3 exploits a pre-existent enhancer landscape for regulatory T cell lineage specification Microenvironmental protection of CML stem and progenitor cells from tyrosine kinase inhibitors through N-cadherin and Wnt-β-catenin signaling FlexiChip package: an universal microarray with a dedicated analysis software for high-thoughput SNPs detection linked to anti-malarial drug resistance Gene expression changes in the nucleus accumbens of alcohol-preferring rats following chronic ethanol consumption Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II. Regulation of alternative splicing by the circadian clock and food related cues Genetic and epigenetic determinants of neurogenesis and myogenesis. Multilineage priming of enhancer repertoires precedes commitment to the B and myeloid cell lineages in hematopoietic progenitors. TAF4/4b x TAF12 displays a unique mode of DNA binding and is required for core promoter function of a subset of genes Patterns of divergence of a large family of nodule cysteine-rich peptides in accessions of Medicago truncatula. Genome-wide identification of TAL1's functional targets: insights into its mechanisms of action in primary erythroid cells Global gene expression profiling reveals SPINK1 as a potential hepatocellular carcinoma marker Early cell fate decisions of human embryonic stem cells and mouse epiblast stem cells are controlled by the same signalling pathways Leukaemogenesis induced by an activating β-catenin mutation in osteoblasts A complex secretory program orchestrated by the inflammasome controls paracrine senescence Gene expression profiling unravels cancer-related hepatic molecular signatures in steatohepatitis but not in steatosis Early transcriptional programming links progression to hepatitis C virus-induced severe liver disease in transplant patients Efficient derivation of functional floor plate tissue from human embryonic stem cells Convergent genesis of an adult neural crest-like dermal stem cell from distinct developmental origins. Heritable genome-wide variation of gene expression and promoter methylation between wild and domesticated chickens Ductal pancreatic cancer modeling and drug screening using human pluripotent stem cell- and patient-derived tumor organoids Suv4-20h histone methyltransferases promote neuroectodermal differentiation by silencing the pluripotency-associated Oct-25 gene Endothelial protein C receptor function in murine and human breast cancer development GABAergic gene expression in postmortem hippocampus from alcoholics and cocaine addicts; corresponding findings in alcohol-naïve P and NP rats Genome-wide expression profiling of in vivo-derived bloodstream parasite stages and dynamic analysis of mRNA alterations during synchronous differentiation in Trypanosoma brucei

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