About: WGCNA

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An Entity of Type : wikibase:Item, within Data Space : wikidata.demo.openlinksw.com associated with source document(s)

R package

Attributes	Values
rdf:type	Item
description	R package (en)
rdfs:label	WGCNA (en)
skos:prefLabel	WGCNA (en)
name	WGCNA (en)
described by source	wds:Q102537983-1493526e-4575-dc2b-6ab9-e17777e7e544
instance of	wds:Q102537983-6f34a5bd-4f5c-7c8d-5cf0-49f7463a6e7a
described by source	WGCNA: an R package for weighted correlation network analysis
instance of	R package
maintained by WikiProject	wds:Q102537983-E35062BC-ED5A-4711-8624-1783A90F1763
maintained by WikiProject	WikiProject Software
Repology project name	wds:Q102537983-6bdf73b8-4522-7820-c76b-8a625139b8ad
Repology project name	r:wgcna
CRAN project	wds:Q102537983-99fb5c8e-4d99-657b-2b72-09685a6f8bb5
CRAN project	WGCNA
is about of	https://www.wikidata.org/wiki/Special:EntityData/Q102537983
is used by of	Weighted correlation network analysis
is used by of	wds:Q17162627-2b2fa1dc-434a-1a3f-e93b-c44c07eda3f0
is main subject of	WGCNA: an R package for weighted correlation network analysis CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses. Identification of 15 lncRNAs Signature for Predicting Survival Benefit of Advanced Melanoma Patients Treated with Anti-PD-1 Monotherapy
is main subject of	wds:Q49843823-223b6972-421c-10b7-6ea7-862eb1947260 wds:Q21284194-b14142fd-4b7d-c261-7a9a-af3ae062a6c5 wds:Q112259430-9DE2CA0C-581F-42B7-9E43-A83E6A1700E1
is depends on software of	CEMiTool
is depends on software of	wds:Q112281656-358c2ab8-456d-7c18-aef3-f592e09fda37
is describes a project that uses of	Taxonomic and functional diversity provides insight into microbial pathways and stress responses in the saline Qinghai Lake, China Molecular alterations induced by a high-fat high-fiber diet in porcine adipose tissues: variations according to the anatomical fat location Differential C3NET reveals disease networks of direct physical interactions Strategies for aggregating gene expression data: the collapseRows R function Systems view of adipogenesis via novel omics-driven and tissue-specific activity scoring of network functional modules Brain transcriptional and epigenetic associations with autism Systems-level analysis of genome-wide association data Gene networks associated with conditional fear in mice identified using a systems genetics approach Integrating genome-wide genetic variations and monocyte expression data reveals trans-regulated gene modules in humans Meta-analysis derived atopic dermatitis (MADAD) transcriptome defines a robust AD signature highlighting the involvement of atherosclerosis and lipid metabolism pathways Identification of Circular RNAs in Kiwifruit and Their Species-Specific Response to Bacterial Canker Pathogen Invasion Transcriptome-based network analysis reveals a spectrum model of human macrophage activation. Aging effects on DNA methylation modules in human brain and blood tissue Discovery and characterization of long intergenic non-coding RNAs (lincRNA) module biomarkers in prostate cancer: an integrative analysis of RNA-Seq data Geometric interpretation of gene coexpression network analysis GATA2 as a potential metastasis-driving gene in prostate cancer Gene Coexpression and Evolutionary Conservation Analysis of the Human Preimplantation Embryos Analyzing the miRNA-Gene Networks to Mine the Important miRNAs under Skin of Human and Mouse A novel microglial subset plays a key role in myelinogenesis in developing brain Neurogenomic evidence for a shared mechanism of the antidepressant effects of exercise and chronic fluoxetine in mice When is hub gene selection better than standard meta-analysis? Network and biosignature analysis for the integration of transcriptomic and metabolomic data to characterize leaf senescence process in sunflower RNA-sequencing reveals early, dynamic transcriptome changes in the corollas of pollinated petunias Genome-wide analysis of coordinated transcript abundance during seed development in different Brassica rapa morphotypes Molecular Mechanisms of Same TCM Syndrome for Different Diseases and Different TCM Syndrome for Same Disease in Chronic Hepatitis B and Liver Cirrhosis Genome-wide transcriptional analysis of T cell activation reveals differential gene expression associated with psoriasis Transcriptomic and phylogenetic analysis of a bacterial cell cycle reveals strong associations between gene co-expression and evolution Berberine ameliorates nonalcoholic fatty liver disease by a global modulation of hepatic mRNA and lncRNA expression profiles Acceleration of age-associated methylation patterns in HIV-1-infected adults Gene expression profiling in C57BL/6J and A/J mouse inbred strains reveals gene networks specific for brain regions independent of genetic background Genes and co-expression modules common to drought and bacterial stress responses in Arabidopsis and rice Drought response transcriptomes are altered in poplar with reduced tonoplast sucrose transporter expression Toll-like receptor 4 in glial inflammatory responses to air pollution in vitro and in vivo Induction of a common microglia gene expression signature by aging and neurodegenerative conditions: a co-expression meta-analysis. DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules Invariance and plasticity in the Drosophila melanogaster metabolomic network in response to temperature Identification of candidate long non-coding RNAs in response to myocardial infarction Dysfunction of the CNS-heart axis in mouse models of Huntington's disease Revealing Pathway Dynamics in Heart Diseases by Analyzing Multiple Differential Networks Molecular ecological network analyses. DNA methylation age of human tissues and cell types Networks of neuronal genes affected by common and rare variants in autism spectrum disorders Positively correlated miRNA-mRNA regulatory networks in mouse frontal cortex during early stages of alcohol dependence Analysis of global gene expression in Brachypodium distachyon reveals extensive network plasticity in response to abiotic stress WGCNA: an R package for weighted correlation network analysis Epigenetic predictor of age Host Transcriptional Response to Influenza and Other Acute Respiratory Viral Infections--A Prospective Cohort Study Differential gene network analysis for the identification of asthma-associated therapeutic targets in allergen-specific T-helper memory responses. Comparative analysis of proteome and transcriptome variation in mouse The effects of age and dietary restriction on the tissue-specific metabolome of Drosophila. Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells. Comparison of co-expression measures: mutual information, correlation, and model based indices Identification and functional analysis of long non-coding RNAs in mouse cleavage stage embryonic development based on single cell transcriptome data Identification and functional analysis of long non-coding RNAs in human and mouse early embryos based on single-cell transcriptome data Weighted gene co-expression network analysis of the peripheral blood from Amyotrophic Lateral Sclerosis patients Bacterial genospecies that are not ecologically coherent: population genomics of Rhizobium leguminosarum Identifying gene networks underlying the neurobiology of ethanol and alcoholism Hypermethylation in the ZBTB20 gene is associated with major depressive disorder Exploring the transcriptome of ciliated cells using in silico dissection of human tissues A systems genetics approach implicates USF1, FADS3, and other causal candidate genes for familial combined hyperlipidemia Full-length single-cell RNA-seq applied to a viral human cancer: applications to HPV expression and splicing analysis in HeLa S3 cells Liverome: a curated database of liver cancer-related gene signatures with self-contained context information Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells Transcript profiling of Populus tomentosa genes in normal, tension, and opposite wood by RNA-seq De Novo and Rare Variants at Multiple Loci Support the Oligogenic Origins of Atrioventricular Septal Heart Defects. Neuroinformatic analyses of common and distinct genetic components associated with major neuropsychiatric disorders Pathway mapping and development of disease-specific biomarkers: protein-based network biomarkers Molecular differences between cerebral blood volume and vessel size in glioblastoma multiforme. Time since onset of disease and individual clinical markers associate with transcriptional changes in uncomplicated dengue A systems level, functional genomics analysis of chronic epilepsy Network module detection: Affinity search technique with the multi-node topological overlap measure Integrating mRNA and miRNA Weighted Gene Co-Expression Networks with eQTLs in the Nucleus Accumbens of Subjects with Alcohol Dependence

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