About: Off-target RNA mutation induced by DNA base editing and its elimination by mutagenesis

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About: Off-target RNA mutation induced by DNA base editing and its elimination by mutagenesis Goto Sponge NotDistinct Permalink

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scientific article published on 11 June 2019

Attributes	Values
rdf:type	Item
description	wetenschappelijk artikel (nl) artículu científicu espublizáu en xunu de 2019 (ast) im Juni 2019 veröffentlichter wissenschaftlicher Artikel (de) наукова стаття, опублікована 11 червня 2019 (uk) 2019 թվականի հունիսի 11-ին հրատարակված գիտական հոդված (hy) scientific article published on 11 June 2019 (en)
publication date	wds:Q66988056-AB2F7D06-9BE3-479C-B4A3-417831949A44
publication date	2019-06-10 00:00:00Z (xsd:dateTime)
language of work or name	wds:Q66988056-5B6658AE-4C87-429F-9BA7-5660EF727F22
language of work or name	English
exact match	wds:Q66988056-872A3360-3C3B-43A6-A084-DFEE116EEEC5
exact match	https://scigraph.springernature.com/pub.10.1038/s41586-019-1314-0
cites work	wds:Q66988056-17AAA888-4290-44E0-956E-C7175497BDC7 wds:Q66988056-1987105A-9D69-4BEF-BB36-5002345C5B0E wds:Q66988056-1B7C4E90-60FC-4882-8934-55DE7454CEB1 wds:Q66988056-1BD10804-A6A1-49F2-8708-AD685F3FC09D wds:Q66988056-1F227D4B-A327-4791-BBAA-1CA5DA1B3BEF wds:Q66988056-202D3DEF-8695-4484-8A83-B34F08903BB9 wds:Q66988056-2B06DD23-7C13-456F-9462-804B78FD29F3 wds:Q66988056-3404BA4F-7799-45B2-A86A-EBE8C125A56F wds:Q66988056-35EC574E-2519-45F0-AE5F-C1C874B0B47B wds:Q66988056-44E83BB5-D166-4362-92D4-69ECA5FB7231 wds:Q66988056-452959AB-1362-47C7-94EF-C52B3DAAAA49 wds:Q66988056-4BC00469-E08A-4C8A-BE90-0BC5A9CD8C13 wds:Q66988056-53B0396E-8ADB-4BA4-A854-CC572AA20225 wds:Q66988056-5A8D98A2-E01B-4E75-BB3F-E27C870961E1 wds:Q66988056-5BF41E7D-FADF-41DD-AAFC-03DB404597C5 wds:Q66988056-68F47655-9F78-48E7-9D8F-0A366E4CD0DC wds:Q66988056-694B5113-02E6-4485-A686-E0054FB4E391 wds:Q66988056-6F54A912-1F78-4442-B528-DBE4912DA78A wds:Q66988056-785B5051-A3C8-421F-83AF-34CD265DF69F wds:Q66988056-7EB71CFF-D44F-4E15-99E1-B9C7140496CA wds:Q66988056-894197C2-CE2E-4B1F-BFCC-711E62C60E90 wds:Q66988056-89D5749B-A4AF-47F3-8866-4B31BA71C1BE wds:Q66988056-8C16053A-CE15-4866-A80A-D3DA48B59140 wds:Q66988056-8F89976E-A5A8-40D0-B9B3-036A687A721C wds:Q66988056-94710E6A-203C-4DAA-9668-8D89621AE182 wds:Q66988056-99F19C50-3F38-48F4-9562-D9B1643EEDDB wds:Q66988056-A5D17BF1-DE7C-4A6B-B198-A598C699EC7D wds:Q66988056-A6068A4A-B360-40F6-B7F9-CA996F9F2943 wds:Q66988056-B36ED32D-D471-4E00-A908-9595E5FA0502 wds:Q66988056-B8E23F4D-7A16-4650-AEE2-683E9EF67B28 wds:Q66988056-DE4D1BB0-AE48-4CCA-882C-9BAAD4B2240B wds:Q66988056-E2C0757F-F7E2-44E4-84B3-5872614A4C04 wds:Q66988056-EB6B2D8B-A159-4BC6-8320-E58E9F6FDFA7 wds:Q66988056-EF05BFAB-769A-4A91-871C-D9BAC6393B6D wds:Q66988056-F0C4B851-444C-4DCB-B3C6-7330ED25F496 wds:Q66988056-F1C1ABA6-4106-42DE-ABDA-2D74B3E35971 wds:Q66988056-FE76DD81-5177-44C2-AADB-49F0B59642DA
cites work	Analysis of an Escherichia coli mutant strain resistant to the cell-killing function encoded by the gef gene family Overexpression of APOBEC-1 results in mooring sequence-dependent promiscuous RNA editing. Inferring the pattern of spontaneous mutation from the pattern of substitution in unitary pseudogenes of Mycobacterium leprae and a comparison of mutation patterns among distantly related organisms The AID/APOBEC family of nucleic acid mutators. WebLogo: A Sequence Logo Generator The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data Full-length RNA-seq from single cells using Smart-seq2. Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G Crystal structure of the anti-viral APOBEC3G catalytic domain and functional implications APOBEC-1-mediated RNA editing tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli Transcription-associated mutational asymmetry in mammalian evolution Model structure of APOBEC3C reveals a binding pocket modulating ribonucleic acid interaction required for encapsidation Trimmomatic: a flexible trimmer for Illumina sequence data RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage The structure of the cytidine deaminase-product complex provides evidence for efficient proton transfer and ground-state destabilization HTSeq--a Python framework to work with high-throughput sequencing data STAR: ultrafast universal RNA-seq aligner Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B. Genome-wide target specificities of CRISPR RNA-guided programmable deaminases Increasing the genome-targeting scope and precision of base editing with engineered Cas9-cytidine deaminase fusions Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage. Optimized base editors enable efficient editing in cells, organoids and mice An APOBEC3A-Cas9 base editor with minimized bystander and off-target activities Improving cytidine and adenine base editors by expression optimization and ancestral reconstruction Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors Base editing: precision chemistry on the genome and transcriptome of living cells Efficient base editing in methylated regions with a human APOBEC3A-Cas9 fusion Genome-wide target specificity of CRISPR RNA-guided adenine base editors Treatment of a metabolic liver disease by in vivo genome base editing in adult mice Analysis and minimization of cellular RNA editing by DNA adenine base editors Development of a gene-editing approach to restore vision loss in Leber congenital amaurosis type 10 In utero CRISPR-mediated therapeutic editing of metabolic genes Structural and kinetic characterization of Escherichia coli TadA, the wobble-specific tRNA deaminase Mutation patterns in the human genome: more variable than expected Integrative single-cell analysis of transcriptome, DNA methylome and chromatin accessibility in mouse oocytes
author name string	wds:Q66988056-1D36DDF7-7312-4407-B9C6-84C0B3D769A2 wds:Q66988056-2770ABAD-D48F-421D-904C-644AC68C749F wds:Q66988056-2791B2D8-D2A7-4072-890B-C65C72BFF0DD wds:Q66988056-429C9213-E909-4362-AEE3-C8BA74893020 wds:Q66988056-4417B537-1096-4D99-9973-E7E34017D81B wds:Q66988056-5FC9ACB5-30FE-4645-8AA6-8146030087D3 wds:Q66988056-81D9A667-8778-4E63-8EC5-78C7757C145E wds:Q66988056-88388A94-68AE-42CD-B72F-B6B4CB42A966 wds:Q66988056-89EA48B0-FEF6-4012-A0B6-FDFB66EAEF08 wds:Q66988056-9254DB15-A2C4-4443-BC58-A9B7B07FA690 wds:Q66988056-F0F1E7CF-B70C-4F2B-913E-16B366BA098E
author name string	Yixue Li Rong Zeng

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