About: High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

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scientific article published in Nature Communications

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rdf:type	Item
description	artículu científicu (ast) wetenschappelijk artikel (nl) article publié dans Nature Communications (fr) наукова стаття, опублікована в листопаді 2018 (uk) im November 2018 veröffentlichter wissenschaftlicher Artikel (de) scientific article published in Nature Communications (en)
publication date	wds:Q59799185-3EE51360-9C35-49D9-ADF9-699749997B8B
publication date	2018-11-30 00:00:00Z (xsd:dateTime)
language of work or name	wds:Q59799185-F33B362C-166D-4D82-89A9-EB7CDB52F6EA
language of work or name	English
exact match	wds:Q59799185-E942730A-57FB-44F4-A294-5040F6128A55
exact match	https://scigraph.springernature.com/pub.10.1038/s41467-018-07641-9
cites work	wds:Q59799185-082EBF2A-1E18-4580-B07C-32CA9BEF2596 wds:Q59799185-0BD9B29D-C6AC-4EDA-96FF-35DDBD84F62B wds:Q59799185-11146BB1-6274-4714-98F8-E4EF2AD92486 wds:Q59799185-1EE17E43-E53E-4064-9B26-232526239223 wds:Q59799185-21D46840-DC81-45C3-AF04-61F1BC7AEEF6 wds:Q59799185-25784653-7CE6-48AC-9863-F4618C828AD7 wds:Q59799185-28E07808-1C65-4724-9C2B-CEBE09352EBC wds:Q59799185-3358C5E0-31C3-4355-A4B9-95BE5A87F73A wds:Q59799185-3CB25E62-2D4C-4BF5-94DD-1B2D98AC70A9 wds:Q59799185-418221E3-65B5-49CD-9DC7-C3B8F4C26E6B wds:Q59799185-4A17DFC5-37B1-4F66-B0F6-013D7B38CF35 wds:Q59799185-52BF84B8-E71F-459D-A895-5EA7F0D785AA wds:Q59799185-5BF4FFE7-4AF7-4F78-8ECE-8B11AF8C13D7 wds:Q59799185-62CC876A-D63D-4E9D-847F-41C208FEE144 wds:Q59799185-683332D7-4E01-4680-B2A8-6A38CB2F5C78 wds:Q59799185-759788D9-3F92-4714-82BB-6B83C33AC4BD wds:Q59799185-76E43409-1408-4BFF-AFED-ED16090B73B6 wds:Q59799185-80AF8236-0840-4FEB-AFED-12910B7A5223 wds:Q59799185-8205165B-8704-42DD-A869-E9FF3579B9BD wds:Q59799185-8832CBB5-AD4E-4780-942A-FD61C148EB5E wds:Q59799185-8DA4C4CE-A33A-4A62-A62F-0E480814DE67 wds:Q59799185-8E68EC09-CA93-41CE-A377-2A7A6D0CBB50 wds:Q59799185-A054FEB8-C6B6-4827-B35D-BF5C7C11F676 wds:Q59799185-B61DBD2D-1099-4380-B81F-512DF94C6C1E wds:Q59799185-BCCDFC32-6F9E-4154-B712-5946768A6B67 wds:Q59799185-C6A86F8B-3A22-4226-A42E-90B6913A16D3 wds:Q59799185-C7C2C1A6-82D3-41EC-87DE-7581C1682F71 wds:Q59799185-D57D98BD-F111-4FF8-9F2B-20EA04E2942E wds:Q59799185-D742496A-D633-49EC-BF66-515785568C09 wds:Q59799185-D88737FF-2A4C-4F04-A445-6D784D4E8D8D wds:Q59799185-D8FEF9A4-84B5-47E1-811E-7B1AA59FBB3A wds:Q59799185-DE6DDA65-3C25-4EA1-8107-D81ECB5A2029 wds:Q59799185-E5B68CF1-632D-47D6-A9BC-3E14D8219678 wds:Q59799185-ED76C5EB-842E-4DF8-9E3C-B56E3E510F74
cites work	Shifting the genomic gold standard for the prokaryotic species definition DNA-DNA hybridization values and their relationship to whole-genome sequence similarities The bacterial species definition in the genomic era. Genomic insights that advance the species definition for prokaryotes Population genomics of early events in the ecological differentiation of bacteria. Toward a more robust assessment of intraspecies diversity, using fewer genetic markers Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis Mauve: multiple alignment of conserved genomic sequence with rearrangements A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Mash: fast genome and metagenome distance estimation using MinHash Assembling large genomes with single-molecule sequencing and locality-sensitive hashing Fast and sensitive protein alignment using DIAMOND Updating prokaryotic taxonomy OrthoANI: An improved algorithm and software for calculating average nucleotide identity The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species BLAT—The BLAST-Like Alignment Tool Versatile and open software for comparing large genomes Search and clustering orders of magnitude faster than BLAST genoPlotR: comparative gene and genome visualization in R Bacterial species may exist, metagenomics reveal Bacterial species and speciation Microbial species delineation using whole genome sequences Accurate and universal delineation of prokaryotic species. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes The dynamic genetic repertoire of microbial communities A null model for microbial diversification. 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life. dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication. A large-scale evaluation of algorithms to calculate average nucleotide identity
author name string	wds:Q59799185-CA89BCEE-1934-4347-A4A5-36E9688D00AC
author name string	Chirag Jain
rdfs:label	High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries (en) High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries (nl)
skos:prefLabel	High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries (en) High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries (nl)
name	High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries (en) High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries (nl)
author	wds:Q59799185-4DD0F40E-1AAA-4E5A-AE55-0C05ACB383DB wds:Q59799185-AC886AB2-241F-4C11-BD5B-AD4118635A0B wds:Q59799185-CE9E18F1-0844-4F51-B3CE-0DD2782E3072 wds:Q59799185-F405DD52-C49B-4F28-8BFB-CE782C9C3118
author	Srinivas Aluru Adam Phillippy Luis Miguel Rodríguez-R Konstantinos T. Konstantinidis
title	wds:Q59799185-03E2E6A6-C242-4941-B118-360ECD685335
title	High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries (en)
page(s)	wds:Q59799185-88A3B8C5-C048-463B-9AC8-93CB73AE3742

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