About: OpenMS and TOPP: Open Source Software for LC-MS Data Analysis

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description	article (en) հոդված (hy) wetenschappelijk artikel (nl) наукова стаття, опублікована в жовтні 2010 (uk) im Oktober 2010 veröffentlichter wissenschaftlicher Artikel (de)
publication date	wds:Q57011809-0DD36E7D-77FC-4DB9-BB7D-2CA2820C3D6D
publication date	2010-10-13 00:00:00Z (xsd:dateTime)
language of work or name	wds:Q57011809-55CDDC2C-FFAC-4F2D-B778-11A9C95083A1
language of work or name	English
cites work	wds:Q57011809-4348B70D-3117-4CCD-B936-BF39A0FF1708 wds:Q57011809-6D2E43A8-9635-49CF-9D4E-B662057B43DD wds:Q57011809-77CCE27C-E70D-4DB7-880C-3F4FC1D2EBBF wds:Q57011809-7E4E1213-11E9-49BB-9E8B-FD49B258F33F wds:Q57011809-86EFA133-81C9-42C4-AE4A-79E55AB7CC82 wds:Q57011809-92FC1565-5E44-4A90-A73B-58AA721EC1E5 wds:Q57011809-9E013778-42A9-4BC6-B3BB-3CFFFFEF9AE9 wds:Q57011809-A4B29FC3-F869-4DAB-8CF5-4039B0B1B554 wds:Q57011809-A7F3872C-C2C3-44B8-8C7F-2564750A4979 wds:Q57011809-A8A58BC2-8478-4603-82BF-645A4CB9CA5D wds:Q57011809-BA122322-9C61-4853-AD38-BD97059CA845 wds:Q57011809-CCBAC8A4-C2A0-4953-B7A6-27E426200E6A wds:Q57011809-DF86B087-BB8D-42B9-B9F2-4C70FBC4CBF0 wds:Q57011809-F41456E2-6F93-4FE7-AEEA-044AA49DB9CD wds:Q57011809-FAABC2B3-7464-4B47-BAA3-D7A591C3AF06
cites work	Probability-based protein identification by searching sequence databases using mass spectrometry data TOPP--the OpenMS proteomics pipeline Statistical learning of peptide retention behavior in chromatographic separations: a new kernel-based approach for computational proteomics LC-MSsim--a simulation software for liquid chromatography mass spectrometry data Highly accelerated feature detection in proteomics data sets using modern graphics processing units The minimum information about a proteomics experiment (MIAPE) OpenMS - an open-source software framework for mass spectrometry Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database Open mass spectrometry search algorithm SeqAn an efficient, generic C++ library for sequence analysis TANDEM: matching proteins with tandem mass spectra InsPecT: identification of posttranslationally modified peptides from tandem mass spectra TOPPView: an open-source viewer for mass spectrometry data De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation SIRIUS: decomposing isotope patterns for metabolite identification
author name string	wds:Q57011809-A7E75BC3-FB7C-441A-833E-C8811F314FC4 wds:Q57011809-BEDD9A7D-036D-409E-9FAA-5747F6B6C1B1 wds:Q57011809-D05E73CC-3870-4950-BD0C-BCDBE25B3194
author name string	Knut Reinert Clemens Gröpl Andreas Bertsch
rdfs:label	OpenMS and TOPP: Open Source Software for LC-MS Data Analysis (en) OpenMS and TOPP: Open Source Software for LC-MS Data Analysis (nl)
skos:prefLabel	OpenMS and TOPP: Open Source Software for LC-MS Data Analysis (en) OpenMS and TOPP: Open Source Software for LC-MS Data Analysis (nl)
name	OpenMS and TOPP: Open Source Software for LC-MS Data Analysis (en) OpenMS and TOPP: Open Source Software for LC-MS Data Analysis (nl)
author	wds:Q57011809-1FE1C314-0CF2-4735-BAD2-DFF461D1F3EC
author	Oliver Kohlbacher
title	wds:Q57011809-DEC4DF45-7423-4E52-AAA3-980E889BCADD
title	OpenMS and TOPP: Open Source Software for LC-MS Data Analysis (en)
page(s)	wds:Q57011809-852CAC1A-3792-432F-9376-EB54A8090B89
page(s)	353-367
instance of	wds:Q57011809-27B40F27-707E-438A-B7D0-88367A86E8B6
instance of	scholarly article
main subject	wds:Q57011809-F69D979A-5C21-4587-AA66-36097CE53FAF wds:Q57011809-FF1AA674-1396-4D02-AAD6-773EF1F3038D
main subject	open-source software software
PubMed ID	wds:Q57011809-4BCCAD48-7877-417A-8B45-902DDB30FB8A
PubMed ID	http://rdf.ncbi.nlm.nih.gov/pubchem/reference/21063960
PubMed ID	21063960
published in	wds:Q57011809-981665DA-9D82-46E7-986B-3F4354D87035
published in	Methods in Molecular Biology
DOI	wds:Q57011809-DC22AE0D-326A-4857-8634-9CB7AFF1E17D
DOI	http://dx.doi.org/10.1007/978-1-60761-987-1_23
DOI	10.1007/978-1-60761-987-1_23
is about of	https://www.wikidata.org/wiki/Special:EntityData/Q57011809
is cites work of	Bioinformatics Tools for Mass Spectroscopy-Based Metabolomic Data Processing and Analysis Optimized Preprocessing of Ultra-Performance Liquid Chromatography/Mass Spectrometry Urinary Metabolic Profiles for Improved Information Recovery Structure and RNA-binding properties of the Not1-Not2-Not5 module of the yeast Ccr4-Not complex Automatic recalibration and processing of tandem mass spectra using formula annotation Structural analysis of the yeast Dhh1-Pat1 complex reveals how Dhh1 engages Pat1, Edc3 and RNA in mutually exclusive interactions Insights into the activation of the helicase Prp43 by biochemical studies and structural mass spectrometry Integral Quantification Accuracy Estimation for Reporter Ion-based Quantitative Proteomics (iQuARI) Data processing methods and quality control strategies for label-free LC-MS protein quantification Data standardization and sharing-the work of the HUPO-PSI. Recent advances in mass spectrometry: data independent analysis and hyper reaction monitoring Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective mz5: space- and time-efficient storage of mass spectrometry data sets Current methods for global proteome identification A complex standard for protein identification, designed by evolution. Using data-independent, high-resolution mass spectrometry in protein biomarker research: perspectives and clinical applications xMSanalyzer: automated pipeline for improved feature detection and downstream analysis of large-scale, non-targeted metabolomics data pyOpenMS: a Python-based interface to the OpenMS mass-spectrometry algorithm library Bioinformatic challenges in targeted proteomics Targeted mass spectrometry-based metabolomic profiling through multiple reaction monitoring of liver and other biological matrices. Statistical approach to protein quantification Personal genomes, quantitative dynamic omics and personalized medicine hEIDI: An Intuitive Application Tool To Organize and Treat Large-Scale Proteomics Data. LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets Introduction to opportunities and pitfalls in functional mass spectrometry based proteomics PGTools: A Software Suite for Proteogenomic Data Analysis and Visualization Mass spectrometry-driven phosphoproteomics: patterning the systems biology mosaic Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC)

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