About: Approximate accelerated stochastic simulation of chemically reacting systems

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article by Daniel T. Gillespie published 22 July 2001 in Journal of Chemical Physics

Attributes	Values
rdf:type	Item
description	artículu científicu (ast) wetenschappelijk artikel (nl) наукова стаття, опублікована в липні 2001 (uk) im Juli 2001 veröffentlichter wissenschaftlicher Artikel (de) article scientifique publié en juillet 2001 (fr) article by Daniel T. Gillespie published 22 July 2001 in Journal of Chemical Physics (en)
publication date	wds:Q56776006-DCE35823-D280-47E2-A4E5-9F61885BFC14
publication date	2001-07-22 00:00:00Z (xsd:dateTime)
language of work or name	wds:Q56776006-9A34C272-3842-427F-9EF7-AD10E1F1C32E
language of work or name	English
cites work	wds:Q56776006-2D1839AB-071B-425A-A921-D1B2E08BB326 wds:Q56776006-419A5926-4FA3-4002-9746-9BA780DE2A58 wds:Q56776006-5A35448E-9B15-4240-827D-81C2F4C62BB7 wds:Q56776006-7E0C7FE9-22A2-4676-B006-618B5CFB99E3 wds:Q56776006-9B94CC26-A254-4AF2-9D05-5112D63FB1E3 wds:Q56776006-B7EA6763-2866-4443-AB80-FE4F393D991A wds:Q56776006-BBF87DAC-8545-4E92-8E9F-BFCA6AEFAE8D
cites work	The chemical Langevin equation Exact stochastic simulation of coupled chemical reactions A general method for numerically simulating the stochastic time evolution of coupled chemical reactions Stochastic mechanisms in gene expression Modelling cellular behaviour A rigorous derivation of the chemical master equation Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels
author name string	wds:Q56776006-4AC849A4-5117-42CE-9B02-882990B48CAB
author name string	Daniel T. Gillespie
rdfs:label	Approximate accelerated stochastic simulation of chemically reacting systems (en) Approximate accelerated stochastic simulation of chemically reacting systems (nl)
skos:prefLabel	Approximate accelerated stochastic simulation of chemically reacting systems (en) Approximate accelerated stochastic simulation of chemically reacting systems (nl)
name	Approximate accelerated stochastic simulation of chemically reacting systems (en) Approximate accelerated stochastic simulation of chemically reacting systems (nl)
title	wds:Q56776006-285A3AFA-A3C1-4694-A01F-7661DF7B20D8
title	Approximate accelerated stochastic simulation of chemically reacting systems (en)
page(s)	wds:Q56776006-8059F8DB-DC42-4FB6-B43C-6E1BB07A3019
page(s)	1716-1733
instance of	wds:Q56776006-1608249E-A985-4DE6-B742-59583988CD6D
instance of	scholarly article
published in	wds:Q56776006-D9052CD9-4579-409F-934D-72C947C04EAE
published in	Journal of Chemical Physics
issue	wds:Q56776006-93824F44-ABE1-4854-96C8-B4B52D78F3CF
volume	wds:Q56776006-09E58C08-8172-4518-91D0-49C8A4740A30
issue	4
volume	115
number of pages	wds:Q56776006-17846672-CE27-4DF5-ADAF-65442F640D0F
number of pages	18 (xsd:decimal)
DOI	wds:Q56776006-EB950610-8BFB-456F-8853-A68BFE58C460
DOI	http://dx.doi.org/10.1063/1.1378322
DOI	10.1063/1.1378322
is about of	https://www.wikidata.org/wiki/Special:EntityData/Q56776006
is cites work of	An accelerated algorithm for discrete stochastic simulation of reaction-diffusion systems using gradient-based diffusion and tau-leaping On the origins of approximations for stochastic chemical kinetics Quasiequilibrium approximation of fast reaction kinetics in stochastic biochemical systems. Accurate implementation of leaping in space: the spatial partitioned-leaping algorithm. Multinomial tau-leaping method for stochastic kinetic simulations. Hybrid simulations of stochastic reaction-diffusion processes for modeling intracellular signaling pathways. R-leaping: accelerating the stochastic simulation algorithm by reaction leaps. Stochastic ion channel gating in dendritic neurons: morphology dependence and probabilistic synaptic activation of dendritic spikes The interplay between discrete noise and nonlinear chemical kinetics in a signal amplification cascade. A variational approach to the stochastic aspects of cellular signal transduction. Adiabatic coarse-graining and simulations of stochastic biochemical networks Rules for modeling signal-transduction systems Elimination of fast variables in chemical Langevin equations Two classes of quasi-steady-state model reductions for stochastic kinetics. MONALISA for stochastic simulations of Petri net models of biochemical systems Can vaccine legacy explain the British pertussis resurgence? Automatic generation of cellular reaction networks with Moleculizer 1.0. Stochastic modelling for quantitative description of heterogeneous biological systems. Cell fate decisions emerge as phages cooperate or compete inside their host The role of type 4 phosphodiesterases in generating microdomains of cAMP: large scale stochastic simulations Estimating the duration of pertussis immunity using epidemiological signatures Signaling pathways involved in striatal synaptic plasticity are sensitive to temporal pattern and exhibit spatial specificity Hybrid modeling and simulation of stochastic effects on progression through the eukaryotic cell cycle A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks Individual identity and movement networks for disease metapopulations Networks and the epidemiology of infectious disease Rule-based modeling of biochemical networks Mixed analog/digital gonadotrope biosynthetic response to gonadotropin-releasing hormone. Early Real-Time Estimation of the Basic Reproduction Number of Emerging Infectious Diseases Quantifying intrinsic and extrinsic variability in stochastic gene expression models Accelerating the Gillespie τ-Leaping Method using graphics processing units A "partitioned leaping" approach for multiscale modeling of chemical reaction dynamics The interplay of intrinsic and extrinsic bounded noises in biomolecular networks Stochastic chemical kinetics : A review of the modelling and simulation approaches Avoiding negative populations in explicit Poisson tau-leaping Efficient step size selection for the tau-leaping simulation method Discrete stochastic simulation methods for chemically reacting systems Fluctuations and slow variables in genetic networks Incorporating postleap checks in tau-leaping. Lattice kinetic Monte Carlo simulations of convective-diffusive systems Broad CTL Response in Early HIV Infection Drives Multiple Concurrent CTL Escapes Control, exploitation and tolerance of intracellular noise Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2. A constant-time kinetic Monte Carlo algorithm for simulation of large biochemical reaction networks Temperature control of fimbriation circuit switch in uropathogenic Escherichia coli: quantitative analysis via automated model abstraction Quantifying stochastic effects in biochemical reaction networks using partitioned leaping. Efficient formulation of the stochastic simulation algorithm for chemically reacting systems Reduction and solution of the chemical master equation using time scale separation and finite state projection Stochastic chemical kinetics and the total quasi-steady-state assumption: application to the stochastic simulation algorithm and chemical master equation.

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