About: Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

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scientific article published in Physical Review Letters

Attributes	Values
rdf:type	Item
description	artículu científicu (ast) wetenschappelijk artikel (nl) наукова стаття, опублікована в серпні 1996 (uk) im August 1996 veröffentlichter wissenschaftlicher Artikel (de) article publié dans la revue scientifique Physical Review Letters (fr) scientific article published in Physical Review Letters (en)
publication date	wds:Q56688821-7544AC86-7CA5-4335-8F85-57BB2C9A4010
publication date	1996-08-26 00:00:00Z (xsd:dateTime)
language of work or name	wds:Q56688821-DCF88676-CD84-4BF6-9824-6CAA817D68C1
language of work or name	English
cites work	wds:Q56688821-02370392-86D5-4D4D-ABA7-2D30489B7C05 wds:Q56688821-41602628-B7EC-40F1-89D4-4832EEA09FC3 wds:Q56688821-5BB23635-E284-4C7E-B39F-5F6A3D60E1A5 wds:Q56688821-765F6C61-D0A6-4EE3-8F59-131DE0746EB1 wds:Q56688821-926A3D52-ABED-4E34-B8DF-E54153FC54DE wds:Q56688821-96F78013-9E0C-4832-B1BF-CA03E4B9D269 wds:Q56688821-9A0B9DBB-A507-457C-A4B0-7042D444838C wds:Q56688821-9DD47344-7E90-4B72-925F-10953946AEA3 wds:Q56688821-C9D8B248-5090-48FA-97C6-1CDFCAA6F355
cites work	Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease and lysozyme Hinge-bending motion in citrate synthase arising from normal mode calculations. Normal mode refinement: crystallographic refinement of protein dynamic structure. I. Theory and test by simulated diffraction data Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor Atomic structure of the actin:DNase I complex Normal modes as refinement parameters for the F-actin model CHARMM: A program for macromolecular energy, minimization, and dynamics calculations On the use of normal modes in thermal parameter refinement: theory and application to the bovine pancreatic trypsin inhibitor Dynamic and elastic properties of F-actin: a normal-modes analysis
author name string	wds:Q56688821-804DC8AA-3422-4AA4-8967-E8430A32F265
author name string	Monique M. Tirion
rdfs:label	Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis (en) Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis (nl)
skos:prefLabel	Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis (en) Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis (nl)
name	Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis (en) Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis (nl)
title	wds:Q56688821-FED8012A-4E27-4AEA-A32A-1A9682419DD8
title	Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis (en)
page(s)	wds:Q56688821-DD629089-BC3E-47F4-B3AE-2EB1B5A6BA05
page(s)	1905-1908
instance of	wds:Q56688821-363AB7DD-04CB-4680-B48D-A8D2C5985495
instance of	scholarly article
PubMed ID	wds:Q56688821-534A2069-A1C8-4440-9CB5-83685F89CBC9
PubMed ID	http://rdf.ncbi.nlm.nih.gov/pubchem/reference/10063201
PubMed ID	10063201
published in	wds:Q56688821-8165C6AA-948B-445C-9232-83E34674B4CC
published in	Physical Review Letters
issue	wds:Q56688821-3A2C9617-7786-4547-BE7F-ECDC7CE97958
volume	wds:Q56688821-1E6D15D6-3FDC-48C3-BF5F-015AAC6271A7
issue	9
volume	77
DOI	wds:Q56688821-A5227C6B-FDB3-4138-B92C-0F4FE9CF1CDD
DOI	http://dx.doi.org/10.1103/PHYSREVLETT.77.1905
DOI	10.1103/PHYSREVLETT.77.1905
is about of	https://www.wikidata.org/wiki/Special:EntityData/Q56688821
is cites work of	Interaction of anesthetics with open and closed conformations of a potassium channel studied via molecular dynamics and normal mode analysis ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement Structure-based predictive models for allosteric hot spots Investigating protein dynamics in collective coordinate space Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations Seeking structural specificity: direct modulation of pentameric ligand-gated ion channels by alcohols and general anesthetics. An intracellular interaction network regulates conformational transitions in the dopamine transporter. A mass weighted chemical elastic network model elucidates closed form domain motions in proteins. Key interactions in integrin ectodomain responsible for global conformational change detected by elastic network normal-mode analysis Coupling of global and local vibrational modes in dynamic allostery of proteins Evaluating elastic network models of crystalline biological molecules with temperature factors, correlated motions, and diffuse x-ray scattering Coupling between normal modes drives protein conformational dynamics: illustrations using allosteric transitions in myosin II Pre-existing soft modes of motion uniquely defined by native contact topology facilitate ligand binding to proteins Exploring the common dynamics of homologous proteins. Application to the globin family. Allosteric transitions in the chaperonin GroEL are captured by a dominant normal mode that is most robust to sequence variations. Comparative study of various normal mode analysis techniques based on partial Hessians Approximate normal mode analysis based on vibrational subsystem analysis with high accuracy and efficiency. Wiggle-predicting functionally flexible regions from primary sequence Overcoming the inadequacies or limitations of experimental structures as drug targets by using computational modeling tools and molecular dynamics simulations Conformational states of the full-length glucagon receptor Functional dynamics of PDZ binding domains: a normal-mode analysis Bend-twist-stretch model for coarse elastic network simulation of biomolecular motion. Mega-Dalton Biomolecular Motion Captured from Electron Microscopy Reconstructions Normal-modes-based prediction of protein conformational changes guided by distance constraints Coarse-grained modeling of the actin filament derived from atomistic-scale simulations Functional dynamics in the voltage-dependent anion channel Cooperative macromolecular device revealed by meta-analysis of static and time-resolved structures A flexible docking scheme to explore the binding selectivity of PDZ domains Hierarchical Conformational Analysis of Native Lysozyme Based on Sub-Millisecond Molecular Dynamics Simulations Large domain fluctuations on 50-ns timescale enable catalytic activity in phosphoglycerate kinase. Elastic network models capture the motions apparent within ensembles of RNA structures Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments. Multi-scale computational modelling in biology and physiology A unique spatial arrangement of the snRNPs within the native spliceosome emerges from in silico studies WEBnm@: a web application for normal mode analyses of proteins Accurate flexible fitting of high-resolution protein structures to small-angle x-ray scattering data using a coarse-grained model with implicit hydration shell Integrating protein structural dynamics and evolutionary analysis with Bio3D. Folding-based molecular simulations reveal mechanisms of the rotary motor F1-ATPase The role of shape in determining molecular motions REACH coarse-grained biomolecular simulation: transferability between different protein structural classes Functional motions can be extracted from on‐lattice construction of protein structures A systematic methodology for defining coarse-grained sites in large biomolecules Detecting selection on protein stability through statistical mechanical models of folding and evolution Domain movements in human fatty acid synthase by quantized elastic deformational model

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