About: Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution

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About: Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution Goto Sponge NotDistinct Permalink

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scientific article published on 30 September 2009

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rdf:type	Item
description	videnskabelig artikel (da) article científic (ca) articolo scientifico (it) artigo científico (pt) bilimsel makale (tr) vedecký článok (sk) vetenskaplig artikel (sv) vědecký článek (cs) wetenschappelijk artikel (nl) wissenschaftlicher Artikel (de) научни чланак (sr) article scientifique (fr) artículu científicu espublizáu en 2009 (ast) наукова стаття, опублікована у вересні 2009 (uk) مقالة علمية نشرت في 30 سبتمبر 2009 (ar) scientific article published on 30 September 2009 (en)
publication date	wds:Q37452459-EC33E933-F346-490D-BA57-1B1C0B2D114B
publication date	2009-09-30 00:00:00Z (xsd:dateTime)
language of work or name	wds:Q37452459-81169386-6B14-486A-9711-7404DA7125F0
language of work or name	English
cites work	wds:Q37452459-037861E7-4B7E-457F-BD9B-E4C27EB34780 wds:Q37452459-05EC8009-78EF-4DD9-865C-F9661D155BAA wds:Q37452459-07C252DC-011B-498A-A614-4ECE6B719DA6 wds:Q37452459-1A5A11AB-F4F8-4918-B916-274C89D91EB9 wds:Q37452459-1E45406E-21F7-4B41-8CAA-5CD49383C530 wds:Q37452459-22585481-557B-48D7-9397-B758B5D02BA6 wds:Q37452459-3844380D-E14B-4D09-A5A3-3C66A192F25B wds:Q37452459-40408E2A-6784-457B-84D5-6E2B39098377 wds:Q37452459-4270FC4D-56D9-4E15-9F02-01D1283D2080 wds:Q37452459-4A8673F5-D29F-42A8-B39D-8B6314E5D8C7 wds:Q37452459-4AE8E42A-C658-4087-8DFF-3AA68C35C67B wds:Q37452459-6B913ABD-7847-42B6-A19E-40E78B251EAD wds:Q37452459-6EFC57A2-B632-4F7B-B90C-06F0F65DBE25 wds:Q37452459-71A2952A-0B6A-4C39-98AC-5FB42504C387 wds:Q37452459-7BCB463B-F50B-4066-BD73-23618372F747 wds:Q37452459-80A93864-B1CF-4404-9B96-BEAE38B59155 wds:Q37452459-8274191A-81CD-468F-A72B-0579C2C74264 wds:Q37452459-8370B498-DD90-4F94-AE91-B9F76804702E wds:Q37452459-8CB2FDB1-569C-4B2E-8EDD-C2448DC6A557 wds:Q37452459-8E4B2640-208D-4F37-839D-B99CB10D73A1 wds:Q37452459-8F8194E6-A33F-4473-B64B-7D6423E865B9 wds:Q37452459-8FB9F63D-9350-4E04-AE05-1D236D9C876A wds:Q37452459-A3E63E31-6147-469E-BEBA-F5B9A71B753A wds:Q37452459-AB62F8A5-FF94-47B7-8DFC-52D504B0916D wds:Q37452459-B4C37906-B373-4726-887C-3D38FF73E803 wds:Q37452459-B782EBD5-F08E-4271-8C5C-58ACEEF8EC37 wds:Q37452459-BB44791C-4E47-48C3-AD4B-FB4DFCC2A87B wds:Q37452459-E12F904A-E4BF-466F-BDA4-D270721077CD wds:Q37452459-EA8D34AA-F11D-4F87-A8E1-52A183591AD9 wds:Q37452459-F42875EC-B177-4C81-AEE3-DC9DF52BB72D wds:Q37452459-F6FC7341-3A8D-4078-AF00-F765E1C9F060 wds:Q37452459-F7E2499E-B0A2-4539-895A-1EBB08D0116D wds:Q37452459-F8C85271-FD35-4E0C-83B2-23D032B8499B wds:Q37452459-FB74E3C1-6ED8-411F-A783-75E577FFF189
cites work	An African HIV-1 sequence from 1959 and implications for the origin of the epidemic Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences Timing the ancestor of the HIV-1 pandemic strains Dating the common ancestor of SIVcpz and HIV-1 group M and the origin of HIV-1 subtypes using a new method to uncover clock-like molecular evolution Relaxed phylogenetics and dating with confidence TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing BEAST: Bayesian evolutionary analysis by sampling trees HIV-1 subtype D infection is associated with faster disease progression than subtype A in spite of similar plasma HIV-1 loads CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Bayesian coalescent inference of past population dynamics from molecular sequences HyPhy: hypothesis testing using phylogenies High rates of human immunodeficiency virus type 1 recombination: near-random segregation of markers one kilobase apart in one round of viral replication Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960 Effect of human immunodeficiency virus Type 1 (HIV-1) subtype on disease progression in persons from Rakai, Uganda, with incident HIV-1 infection Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004. Selection forces and constraints on retroviral sequence variation. Unequal evolutionary rates in the human immunodeficiency virus type 1 (HIV-1) pandemic: the evolutionary rate of HIV-1 slows down when the epidemic rate increases Comparative study of adaptive molecular evolution in different human immunodeficiency virus groups and subtypes Chimpanzee reservoirs of pandemic and nonpandemic HIV-1 The causes and consequences of HIV evolution Different epidemic potentials of the HIV-1B and C subtypes HIV-1 nomenclature proposal. Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences The emergence of HIV/AIDS in the Americas and beyond Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning Comparative population dynamics of HIV-1 subtypes B and C: subtype-specific differences in patterns of epidemic growth. An automated genotyping system for analysis of HIV-1 and other microbial sequences Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics U.S. Human immunodeficiency virus type 1 epidemic: date of origin, population history, and characterization of early strains A viral sampling design for testing the molecular clock and for estimating evolutionary rates and divergence times. The predominance of Human Immunodeficiency Virus type 1 (HIV-1) circulating recombinant form 02 (CRF02_AG) in West Central Africa may be related to its replicative fitness A simple hierarchical approach to modeling distributions of substitution rates.
author name string	wds:Q37452459-D1F47177-C065-4846-94FF-0487FA29C47E
author name string	Philippe Lemey
rdfs:label	Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution. (nl) Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution (en) Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution (ast)
skos:prefLabel	Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution. (nl) Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution (en) Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution (ast)
name	Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution. (nl) Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution (en) Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution (ast)

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