About: Replica exchange with nonequilibrium switches

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description	videnskabelig artikel (da) article científic (ca) articolo scientifico (it) artigo científico (pt) bilimsel makale (tr) vedecký článok (sk) vetenskaplig artikel (sv) vědecký článek (cs) wetenschappelijk artikel (nl) wissenschaftlicher Artikel (de) научни чланак (sr) article scientifique (fr) scholarly article (en) artículu científicu espublizáu en 2009 (ast) 2009年學術文章 (zh) наукова стаття, опублікована в липні 2009 (uk) مقالة علمية نشرت في 10 يوليو 2009 (ar) 2009 թվականի հուլիսի 10-ին հրատարակված գիտական հոդված (hy)
publication date	wds:Q37282392-14586709-528F-49CA-AEA0-7D0E2419C958
publication date	2009-07-10 00:00:00Z (xsd:dateTime)
language of work or name	wds:Q37282392-900CCE7F-1221-4D81-BF11-0A5D72D10815
language of work or name	English
cites work	wds:Q37282392-09F74232-B191-4931-8982-EE774BEED55A wds:Q37282392-18BC3D39-AFA0-4ADA-92F5-08101D2418D6 wds:Q37282392-1D1938EA-88FF-4552-9BB7-6166C1464300 wds:Q37282392-2131D4A4-B910-4F04-ACFF-3C32C3654B04 wds:Q37282392-28FB62A4-E587-4F6D-AA21-FC0555A787BC wds:Q37282392-389BBA85-C85A-435F-9BC3-CA49958039EA wds:Q37282392-3DC94D97-3AF5-4492-96A6-6A94C2CE68D9 wds:Q37282392-478E99D9-2D39-402F-9CED-E4FEE44A1FAE wds:Q37282392-4BAAAEA0-DBB1-4E6E-BF24-B2683DDC79AF wds:Q37282392-65EA1A7B-7DA4-4BCD-955C-417FADCD5305 wds:Q37282392-82D21128-CD05-48D0-8BC4-33F1F2072ABA wds:Q37282392-89277041-7508-4C6E-B9CE-9281893FB515 wds:Q37282392-9F9390D7-453A-42E8-8B39-1BF01E06225F wds:Q37282392-A58C5019-6A4A-4920-9296-ADE2B60957A1 wds:Q37282392-A9DCD9C3-FD96-4F10-9D6F-7F4B2142D371 wds:Q37282392-C4E1F275-E39A-4BD4-95E7-16FA13F3E38B wds:Q37282392-C60623B7-03AE-4D81-95C8-DA400B5A20A9 wds:Q37282392-C8773DF4-C1EB-4F52-A702-AAD732180708 wds:Q37282392-CD13F352-DE24-4D5E-A432-BA46E3FF571A wds:Q37282392-D2F6CA7C-5B38-4E67-83F3-0E6DB4E6ED12 wds:Q37282392-DCDA1024-D7BD-498C-97B0-C7804F24EC57 wds:Q37282392-E35AF68F-B556-47CA-AC4D-85836409722A wds:Q37282392-EAEC8A9C-6DB1-4FB8-9F37-8DA9FB63D6A3 wds:Q37282392-EC5307A3-4877-4799-BBA4-658F0E975A47 wds:Q37282392-EDE02F31-0E46-4D7F-ACC9-479829BC844E wds:Q37282392-F8744D3D-1148-4DD0-890B-82A725E58A55 wds:Q37282392-F958F057-D9E3-4536-8EFC-DF32F27681A4
cites work	Speed-up of Monte Carlo simulations by sampling of rejected states Molecular dynamics simulations at constant pressure and/or temperature Replica-exchange molecular dynamics method for protein folding Generalized-ensemble algorithms for molecular simulations of biopolymers Nonequilibrium Measurements of Free Energy Differences for Microscopically Reversible Markovian Systems Replica exchange with solute tempering: a method for sampling biological systems in explicit water Simulating replica exchange simulations of protein folding with a kinetic network model A Second Look at Canonical Sampling of Biomolecules using Replica Exchange Simulation Cool walking: a new Markov chain Monte Carlo sampling method Replica exchange with dynamical scaling. Optimized parallel tempering simulations of proteins. Extended state-space Monte Carlo methods. Exchange frequency in replica exchange molecular dynamics How Efficient Is Replica Exchange Molecular Dynamics? An Analytic Approach A Second Look at Canonical Sampling of Biomolecules Using Replica Exchange Simulation [J. Chem. Theory Comput. 2, 1200-1202 (2006)] Free energy reconstruction from nonequilibrium single-molecule pulling experiments Parallel tempering: theory, applications, and new perspectives Replica Monte Carlo simulation of spin glasses. Peptide folding simulations Molecular simulation with variable protonation states at constant pH Hydrophobic aided replica exchange: an efficient algorithm for protein folding in explicit solvent Replica-exchange method using the generalized effective potential. Comparison of the serial and parallel algorithms of generalized ensemble simulations: an analytical approach. Biased sampling of nonequilibrium trajectories: can fast switching simulations outperform conventional free energy calculation methods? Escorted free energy simulations: improving convergence by reducing dissipation. Equilibrium free energies from fast-switching trajectories with large time steps. Satisfying the fluctuation theorem in free-energy calculations with Hamiltonian replica exchange.
author name string	wds:Q37282392-367AA987-2911-4C97-8060-90386DD01D06
author name string	Andrew J Ballard
rdfs:label	Replica exchange with nonequilibrium switches (en) Replica exchange with nonequilibrium switches (nl) Replica exchange with nonequilibrium switches (ast)
skos:prefLabel	Replica exchange with nonequilibrium switches (en) Replica exchange with nonequilibrium switches (nl) Replica exchange with nonequilibrium switches (ast)
name	Replica exchange with nonequilibrium switches (en) Replica exchange with nonequilibrium switches (nl) Replica exchange with nonequilibrium switches (ast)
author	wds:Q37282392-978E1D59-4198-4CF7-9854-3937BC58B88A
author	Christopher Jarzynski
title	wds:Q37282392-715F1399-0EB3-4A24-9AB4-9EFB5C776F2F
title	Replica exchange with nonequilibrium switches (en)
page(s)	wds:Q37282392-70FEE08B-D66C-4983-A056-DA5359700FAD
page(s)	12224-12229
instance of	wds:Q37282392-E3E1187E-D533-4B45-A3B7-089A26422A35
instance of	scholarly article
PubMed ID	wds:Q37282392-FFDC7A6D-2D79-4DCC-9DD0-DC18C6353B0C
PubMed ID	http://rdf.ncbi.nlm.nih.gov/pubchem/reference/19592512
PubMed ID	19592512
published in	wds:Q37282392-0B4B00C9-76CD-4B91-A497-16A68A564C61

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