About: Conformational structure and binding mode of glyceraldehyde-3-phosphate dehydrogenase to tRNA studied by Raman and CD spectroscopy

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About: Conformational structure and binding mode of glyceraldehyde-3-phosphate dehydrogenase to tRNA studied by Raman and CD spectroscopy Goto Sponge Distinct Permalink

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scientific article published on 01 July 1999

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rdf:type	Item
description	wetenschappelijk artikel (nl) наукова стаття, опублікована в липні 1999 (uk) im Juli 1999 veröffentlichter wissenschaftlicher Artikel (de) artículu científicu espublizáu en xunetu de 1999 (ast) scientific article published on 01 July 1999 (en)
publication date	wds:Q78003747-E132E373-459F-419D-BDEA-6B60CCC19FA4
publication date	1999-07-01 00:00:00Z (xsd:dateTime)
language of work or name	wds:Q78003747-6356832B-B67D-4727-9827-F5668DF675C1
language of work or name	English
cites work	wds:Q78003747-047B7D4B-0C4E-460E-90B7-94DC14A9C5D8 wds:Q78003747-06A586B0-F414-410D-B686-8E6218518B82 wds:Q78003747-1D50E268-6D80-452A-85BB-23A9CDF21BAA wds:Q78003747-29F24E92-111C-47BD-9530-810C06F8A97A wds:Q78003747-2D049D9E-A604-4EBD-84AB-8270B7922ECD wds:Q78003747-3B7C167D-1530-419E-AAD5-A7317B9A183B wds:Q78003747-3EE50EA6-534C-42AA-9FF9-1364AC4CDDCF wds:Q78003747-46B8ECF1-BD30-479F-9350-5F84DB6EAFC4 wds:Q78003747-48E3F10F-EAB0-43AF-8140-6257A3EC485A wds:Q78003747-49E6BF1A-5282-407E-81DC-D76E39186333 wds:Q78003747-4CDA2425-8DFF-4631-AA0E-4D8B18082C58 wds:Q78003747-55716A71-A180-46DE-AE26-DEA8981D005B wds:Q78003747-559F846B-E060-4B69-8DDE-EAE406B761DB wds:Q78003747-576E6EA5-C5F1-4452-9C16-00390F4FB5E2 wds:Q78003747-5A7727B4-A01A-48C2-9925-024826A12921 wds:Q78003747-627DD0DA-E8D9-485C-9E9E-22BC1AE709CC wds:Q78003747-751491B6-F146-48C2-AA8B-52FCC93A03FD wds:Q78003747-9222D9EB-8A32-4F36-AB0E-642C8B8DC003 wds:Q78003747-92B584DD-F523-4B1C-93A4-1FB574A824FF wds:Q78003747-9C2DF9CC-DBDA-4704-864C-DFE14446CB1B wds:Q78003747-A23D780F-FB84-4DD0-B4C7-97804340B0FD wds:Q78003747-A6E97D24-2C8E-445C-9DD1-74E232707E7C wds:Q78003747-AB8AA212-37C8-42AA-8DCC-4436CF8ADF66 wds:Q78003747-AC5820D2-66D4-44DE-A062-94021D4BA941 wds:Q78003747-AE2C7408-5E3C-4F14-8196-B38E389CFE2F wds:Q78003747-B024FB26-F460-491D-9E56-8349FF0C7874 wds:Q78003747-B8AD6CB1-8DEA-4B81-8FBF-4BDDB0BC8239 wds:Q78003747-B9F5E4FB-E6AE-4E09-9254-D1AB1F903120 wds:Q78003747-BB99FF9B-35FA-4B28-9F80-D0A762FC1D87 wds:Q78003747-C2C95EE4-65AC-4A1B-8551-7C94098B4848 wds:Q78003747-C2CCDDB9-B09A-45A1-AA48-156608AA65C7 wds:Q78003747-CCB811B8-229E-494F-9403-5C1697396955 wds:Q78003747-CEDD2E38-F639-4E36-A121-6646163C5BE5 wds:Q78003747-D68CBD97-F53E-4C58-9945-6FDA6BF494B8 wds:Q78003747-DBFD07C0-52FF-4B46-A8C8-C0B9DA5B9F01 wds:Q78003747-DDC35EA4-518E-49F0-B5A5-A9D0A301F2B6 wds:Q78003747-E415DA1C-4AB9-46DD-8584-B6BD109B382D wds:Q78003747-E47B4D44-1D57-4189-ABB1-CDB3A7EC70D0 wds:Q78003747-F0408312-8909-4126-8F59-2972F7D74A07 wds:Q78003747-F040D5B0-4019-4997-9EEE-9DD9C4A028A1 wds:Q78003747-F22233AE-BA8F-487A-B1B0-BDC8F5279912 wds:Q78003747-F68FF61B-6260-4C39-BCF9-0BFE1C049DA8 wds:Q78003747-FD23AF60-1BA2-429C-B0E7-2E0157009572
cites work	DNA recognition by proteins with the helix-turn-helix motif Conserved structures and diversity of functions of RNA-binding proteins No tRNA3Lys unwinding in a complex with HIV NCp7 RNA-binding domain of the A protein component of the U1 small nuclear ribonucleoprotein analyzed by NMR spectroscopy is structurally similar to ribosomal proteins RNA recognition: towards identifying determinants of specificity Specific interaction of glyceraldehyde 3-phosphate dehydrogenase with the 5'-nontranslated RNA of hepatitis A virus Glyceraldehyde-3-phosphate dehydrogenase selectively binds AU-rich RNA in the NAD(+)-binding region (Rossmann fold). Specific interaction in vitro and in vivo of glyceraldehyde-3-phosphate dehydrogenase and LA protein with cis-acting RNAs of human parainfluenza virus type 3. Rapid plasmenylethanolamine-selective fusion of membrane bilayers catalyzed by an isoform of glyceraldehyde-3-phosphate dehydrogenase: discrimination between glycolytic and fusogenic roles of individual isoforms. Enhancement of hammerhead ribozyme catalysis by glyceraldehyde-3-phosphate dehydrogenase Uracil DNA-glycosylase/glyceraldehyde-3-phosphate dehydrogenase is an Ap4A binding protein Three-dimensional structure of D-glyceraldehyde-3-phosphate dehydrogenase Structure of holo-glyceraldehyde-3-phosphate dehydrogenase from Bacillus stearothermophilus at 1.8 A resolution Structural studies of protein-nucleic acid interaction: the sources of sequence-specific binding Different conformations of double-stranded nucleic acid in solution as revealed by circular dichroism Sequence-specific binding of transfer RNA by glyceraldehyde-3-phosphate dehydrogenase Tests for comparing related amino-acid sequences. Cytochrome c and cytochrome c551 Sequence of the rabbit glyceraldehyde-3-phosphate dehydrogenase-encoding cDNA. Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins Characterization of individual tryptophan side chains in proteins using Raman spectroscopy and hydrogen-deuterium exchange kinetics Structure in solution of the major cold-shock protein from Bacillus subtilis Ribosomal protein L6: structural evidence of gene duplication from a primitive RNA binding protein Interpretation of the doublet at 850 and 830 cm-1 in the Raman spectra of tyrosyl residues in proteins and certain model compounds Comparison of the structures of wild-type and a N313T mutant of Escherichia coli glyceraldehyde 3-phosphate dehydrogenases: implication for NAD binding and cooperativity Sequence and structure of D-glyceraldehyde 3-phosphate dehydrogenase from Bacillus stearothermophilus Studies on a mammalian cell protein (P8) with affinity for DNA in vitro A crystallographic comparison between mutated glyceraldehyde-3-phosphate dehydrogenases from Bacillus stearothermophilus complexed with either NAD+ or NADP+ An optimized potential function for the calculation of nucleic acid interaction energies I. base stacking The binding mode of drugs to the TAR RNA of HIV-1 studied by electric linear dichroism Secondary structure and interactions of the packaged dsDNA genome of bacteriophage P22 investigated by Raman difference spectroscopy Molecular models and structural comparisons of native and mutant class I filamentous bacteriophages Ff (fd, f1, M13), If1 and IKe Circular dichroism and molecular modeling yield a structure for the complex of human immunodeficiency virus type 1 trans-activation response RNA and the binding region of Tat, the trans-acting transcriptional activator Circular dichroism spectra of poly[d(AC):d(GT)], poly[r(AC):r(GU)], and hybrids poly[d(AC):r(GU)] and poly[r(AC):d(GT)] in the presence of ethanol Estimation of protein secondary structure from the laser Raman amide I spectrum Three-dimensional structure of a cloning vector. X-ray diffraction studies of filamentous bacteriophage M13 at 7 A resolution The Raman spectra of left-handed DNA oligomers incorporating adenine-thymine base pairs+ Local and overall conformations of DNA double helices with the A - T base pairs Raman spectroscopy of the filamentous virus Ff (fd, fl, M13): structural interpretation for coat protein aromatics An ultraviolet resonance Raman study of dehydrogenase enzymes and their interactions with coenzymes and substrates Structural evidence for ligand-induced sequential conformational changes in glyceraldehyde 3-phosphate dehydrogenase Secondary structure prediction for RNA binding domain in RNP proteins identifies beta alpha beta as the main structural motif. Novel tyrosine markers in Raman spectra of wild-type and mutant (Y21M and Y24M) Ff virions indicate unusual environments for coat protein phenoxyls Preliminary crystallographic analysis of glyceraldehyde 3-phosphate dehydrogenase from the extreme thermophile Thermus aquaticus.
author name string	wds:Q78003747-473A04AC-5C11-4A3D-83A5-E90596016681 wds:Q78003747-4EB245B4-142D-4732-85CF-6F5E94485A1D wds:Q78003747-E0B1B652-01BB-41E5-9E28-C0EB101C8654
author name string	A Rodríguez-Casado

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